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OPENSEQ.org

L17 - S07
UniProt: Q9Z9H5 - P17291
Length: 274
Sequences: 1098
Seq/Len: 4.01
I_Prob: 0.02
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cG 3v2dR 3v2eG 3v2fRContact Map
2j002j00G 2j01R 2j02G 2j03RContact Map
4juw4juwG 4juxRContact Map
4kix4kixN 4kiyG 4kizN 4kj0G 4kj1N 4kj2G 4kj3N 4kj4GContact Map
4kj54kj5N 4kj6G 4kj7N 4kj8G 4kj9N 4kjaG 4kjbN 4kjcGContact Map
3uyd3uydJ 3uye0 3uyfJ 3uyg0Contact Map
4gd13r8sN 3r8tN 4gd1G 4gd2GContact Map
3knh3knhG 3kniR 3knjG 3knkRContact Map
3ohc3ohcG 3ohdG 3ohjR 3ohkRContact Map
3f1e3f1eG 3f1fR 3f1gG 3f1hRContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
11_N 133_G 1.01 0.02
35_T 12_L 0.91 0.01
82_E 76_R 0.90 0.01
61_H 25_A 0.90 0.01
117_V 33_D 0.88 0.01
87_Y 20_D 0.83 0.01
30_T 100_A 0.81 0.01
83_I 108_A 0.80 0.01
84_A 124_L 0.79 0.01
17_R 31_M 0.78 0.01
42_K 38_L 0.77 0.01
78_K 4_R 0.76 0.01
21_Y 9_V 0.73 0.01
67_L 101_L 0.73 0.01
86_R 138_K 0.73 0.01
82_E 33_D 0.72 0.01
40_K 77_S 0.72 0.01
118_E 20_D 0.70 0.01
38_V 108_A 0.68 0.01
112_A 63_K 0.66 0.01
86_R 2_A 0.66 0.01
58_G 128_A 0.66 0.01
70_L 32_R 0.65 0.01
32_G 130_G 0.65 0.01
108_G 114_R 0.65 0.01
114_V 118_V 0.64 0.01
114_V 8_E 0.64 0.01
82_E 40_A 0.63 0.01
40_K 98_S 0.63 0.01
113_L 138_K 0.63 0.01
49_D 138_K 0.63 0.01
30_T 4_R 0.62 0.01
116_L 133_G 0.62 0.01
72_D 83_A 0.62 0.01
76_V 83_A 0.62 0.01
112_A 21_V 0.61 0.01
38_V 5_R 0.61 0.01
30_T 121_A 0.61 0.01
33_R 83_A 0.61 0.01
74_K 143_R 0.61 0.01
98_L 105_V 0.60 0.01
35_T 27_I 0.60 0.01
40_K 66_V 0.60 0.01
17_R 147_A 0.60 0.01
11_N 93_P 0.59 0.01
38_V 2_A 0.59 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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