May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L10 - L31
UniProt: Q8VVE3 - Q5SJE1
Length: 244
Sequences: 1371
Seq/Len: 5.88
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2j002j01J4 2j03J4Contact Map
3i8f3i8f4 3i8iY4Contact Map
3kiq3kirJ4 3kitJ4Contact Map
3pys3pytI1 3pyvI1Contact Map
3pyn3pyoI1 3pyrI1Contact Map
3kiu3kiwJ4 3kiyJ4Contact Map
3mr83mrzI1 3ms1I1Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
112_L 43_Y 0.81 0.00
82_F 53_E 0.74 0.00
7_V 65_D 0.69 0.00
61_L 62_R 0.66 0.00
23_S 50_V 0.63 0.00
4_K 52_T 0.63 0.00
89_A 62_R 0.62 0.00
7_V 26_S 0.62 0.00
39_A 25_Y 0.62 0.00
80_V 52_T 0.61 0.00
149_L 58_R 0.61 0.00
43_A 62_R 0.61 0.00
122_V 56_V 0.59 0.00
133_E 12_A 0.59 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.3387 seconds.