May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L10 - L15
UniProt: Q8VVE3 - Q5SHQ7
Length: 323
Sequences: 1368
Seq/Len: 4.38
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoGLOContact Map
1vq81vq8GLOContact Map
1vqp1vqpGLOContact Map
1vqm1vqmGLOContact Map
1vql1vqlGLOContact Map
1vqk1vqkGLOContact Map
1yhq1yhqGLOContact Map
1s721s72GLOContact Map
1vq91vq9GLOContact Map
1vqn1vqnGLOContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
57_T 8_P 0.74 0.00
128_L 80_Y 0.69 0.00
44_L 40_S 0.67 0.00
23_S 31_A 0.66 0.00
14_K 136_E 0.65 0.00
64_K 126_V 0.64 0.00
4_K 102_R 0.63 0.00
98_K 102_R 0.62 0.00
11_A 68_Q 0.62 0.00
57_T 68_Q 0.61 0.00
13_L 24_G 0.61 0.00
18_E 133_S 0.61 0.00
66_L 101_V 0.60 0.00
110_G 65_R 0.60 0.00
107_V 106_L 0.60 0.00
46_Q 6_L 0.60 0.00
60_R 40_S 0.59 0.00
31_G 58_T 0.59 0.00
107_V 64_K 0.59 0.00
158_R 122_P 0.59 0.00
122_V 65_R 0.59 0.00
19_R 135_L 0.59 0.00
107_V 19_V 0.58 0.00
44_L 123_L 0.58 0.00
11_A 144_E 0.57 0.00
91_K 146_V 0.57 0.00
80_V 36_K 0.57 0.00
12_T 88_L 0.57 0.00
20_A 82_G 0.57 0.00
130_T 56_S 0.56 0.00
136_A 116_G 0.56 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.1677 seconds.