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OPENSEQ.org

L10 - S14
UniProt: Q8VVE3 - Q5SHQ1
Length: 234
Sequences: 1310
Seq/Len: 5.70
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2j002j00N 2j01J 2j02N 2j03JContact Map
4kix4kix5 4kiyN 4kiz5 4kj0N 4kj15 4kj2N 4kj4NContact Map
4kj54kj55 4kj6N 4kj8N 4kj95 4kjaN 4kjcNContact Map
3u5b3u5cd 3u5gd 3u5iqContact Map
3i8f3i8gQ 3i8hQ 3i8iYContact Map
3sfs3sfsN 3sgfHContact Map
3d5a3d5aN 3d5bJ 3d5cN 3d5dJContact Map
3kiq3kiqn 3kirJ 3kisn 3kitJContact Map
3pys3pysN 3pytI 3pyuN 3pyvIContact Map
3pyn3pynN 3pyoI 3pyqN 3pyrIContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
91_K 31_R 0.87 0.00
57_T 38_G 0.84 0.00
105_P 18_V 0.81 0.00
49_A 59_A 0.69 0.00
139_V 49_H 0.66 0.00
107_V 8_E 0.66 0.00
83_Y 53_L 0.65 0.00
145_P 53_L 0.65 0.00
82_F 46_E 0.64 0.00
121_D 7_I 0.62 0.00
96_F 53_L 0.62 0.00
171_K 4_K 0.62 0.00
6_N 44_L 0.61 0.00
35_K 47_L 0.60 0.00
33_P 32_S 0.60 0.00
69_P 32_S 0.60 0.00
163_I 42_I 0.59 0.00
76_G 46_E 0.59 0.00
79_A 56_V 0.58 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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