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OPENSEQ.org
L10 - S12
UniProt: Q8VVE3 - Q5SHN3
Length: 305
Sequences: 1140
Seq/Len: 3.88
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2j002j00L 2j01J 2j02L 2j03JContact Map
4kix4kix5 4kiyL 4kiz5 4kj0L 4kj15 4kj2L 4kj4LContact Map
4kj54kj55 4kj6L 4kj8L 4kj95 4kjaL 4kjcLContact Map
3u5b3u5cX 3u5gX 3u5iqContact Map
3i8f3i8gO 3i8hO 3i8iYContact Map
3sfs3sfsL 3sgfHContact Map
3d5a3d5aL 3d5bJ 3d5cL 3d5dJContact Map
3kiq3kiql 3kirJ 3kisl 3kitJContact Map
3pys3pysL 3pytI 3pyuL 3pyvIContact Map
3pyn3pynL 3pyoI 3pyqL 3pyrIContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
24_F 70_E 0.98 0.01
99_S 22_P 0.92 0.01
21_Q 113_S 0.91 0.01
110_G 2_P 0.91 0.01
36_E 82_I 0.90 0.01
66_L 30_R 0.90 0.01
34_A 68_P 0.90 0.01
51_L 11_G 0.89 0.01
28_N 119_T 0.89 0.01
127_E 13_E 0.88 0.01
87_V 30_R 0.87 0.01
95_Q 14_K 0.84 0.01
46_Q 122_P 0.83 0.01
32_L 53_A 0.83 0.01
135_R 27_A 0.83 0.01
113_Q 21_V 0.82 0.01
7_V 60_G 0.80 0.01
80_V 104_A 0.79 0.01
79_A 68_P 0.79 0.01
55_K 53_A 0.79 0.01
119_A 43_K 0.77 0.01
1_M 70_E 0.76 0.01
129_P 5_N 0.76 0.01
141_V 98_V 0.76 0.01
93_L 64_T 0.75 0.01
83_Y 96_H 0.75 0.01
80_V 56_R 0.74 0.01
143_Q 101_V 0.73 0.01
130_T 104_A 0.73 0.01
125_L 121_K 0.72 0.01
54_A 54_K 0.72 0.01
125_L 49_L 0.71 0.01
129_P 79_V 0.70 0.01
3_N 58_T 0.69 0.01
160_L 58_T 0.69 0.01
35_K 108_K 0.68 0.01
44_L 68_P 0.68 0.01
133_E 70_E 0.68 0.01
145_P 21_V 0.67 0.01
124_A 58_T 0.67 0.01
48_G 116_K 0.67 0.01
108_K 18_K 0.67 0.01
9_L 81_L 0.66 0.01
65_E 65_A 0.66 0.01
70_E 65_A 0.66 0.01
145_P 5_N 0.65 0.01
60_R 70_E 0.64 0.00
92_T 19_S 0.64 0.00
167_Y 79_V 0.64 0.00
83_Y 5_N 0.63 0.00
140_G 13_E 0.63 0.00
54_A 105_A 0.63 0.00
110_G 105_A 0.63 0.00
45_K 5_N 0.63 0.00
74_L 49_L 0.62 0.00
10_L 112_K 0.62 0.00
76_G 11_G 0.62 0.00
73_G 109_D 0.62 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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