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OPENSEQ.org

L10 - S13
UniProt: Q8VVE3 - P80377
Length: 299
Sequences: 1267
Seq/Len: 4.34
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2j002j00M 2j01J 2j02M 2j03JContact Map
4kix4kix5 4kiyM 4kiz5 4kj0M 4kj15 4kj2M 4kj4MContact Map
4kj54kj55 4kj6M 4kj8M 4kj95 4kjaM 4kjcMContact Map
3i8f3i8gP 3i8hP 3i8iYContact Map
3sfs3sfsM 3sgfHContact Map
3d5a3d5aM 3d5bJ 3d5cM 3d5dJContact Map
3kiq3kiqm 3kirJ 3kism 3kitJContact Map
3pys3pysM 3pytI 3pyuM 3pyvIContact Map
3pyn3pynM 3pyoI 3pyqM 3pyrIContact Map
3kiu3kium 3kiwJ 3kixm 3kiyJContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
1_M 14_R 0.86 0.00
103_G 115_K 0.82 0.00
79_A 11_R 0.80 0.00
59_I 30_A 0.80 0.00
59_I 114_R 0.78 0.00
66_L 84_I 0.77 0.00
14_K 115_K 0.76 0.00
129_P 79_K 0.74 0.00
58_L 113_P 0.72 0.00
50_R 34_L 0.71 0.00
130_T 121_K 0.71 0.00
125_L 38_G 0.71 0.00
146_M 56_L 0.70 0.00
73_G 56_L 0.69 0.00
129_P 48_L 0.68 0.00
1_M 90_L 0.67 0.00
25_F 72_A 0.67 0.00
115_Q 25_I 0.66 0.00
69_P 28_A 0.66 0.00
113_Q 85_G 0.65 0.00
129_P 88_R 0.65 0.00
32_L 18_A 0.64 0.00
18_E 55_R 0.64 0.00
129_P 81_L 0.64 0.00
29_Y 46_K 0.64 0.00
26_L 53_V 0.63 0.00
164_L 4_I 0.63 0.00
12_T 23_Y 0.63 0.00
35_K 12_N 0.62 0.00
128_L 65_K 0.62 0.00
34_A 66_L 0.62 0.00
116_I 76_A 0.62 0.00
60_R 104_R 0.61 0.00
119_A 58_E 0.61 0.00
37_T 18_A 0.61 0.00
154_G 82_M 0.61 0.00
37_T 76_A 0.60 0.00
8_E 40_N 0.60 0.00
141_V 7_V 0.60 0.00
60_R 60_V 0.60 0.00
11_A 32_E 0.59 0.00
82_F 75_A 0.59 0.00
49_A 18_A 0.59 0.00
26_L 114_R 0.58 0.00
36_E 104_R 0.58 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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