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OPENSEQ.org
L10 - S04
UniProt: Q8VVE3 - P80373
Length: 382
Sequences: 1274
Seq/Len: 3.38
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2j002j00D 2j01J 2j02D 2j03JContact Map
4kix4kix5 4kiyD 4kiz5 4kj0D 4kj15 4kj2D 4kj4DContact Map
4kj54kj55 4kj6D 4kj8D 4kj95 4kjaD 4kjcDContact Map
3i8f3i8gG 3i8hG 3i8iYContact Map
3sfs3sfsD 3sgfHContact Map
3d5a3d5aD 3d5bJ 3d5cD 3d5dJContact Map
3kiq3kiqd 3kirJ 3kisd 3kitJContact Map
3pys3pysD 3pytI 3pyuD 3pyvIContact Map
3pyn3pynD 3pyoI 3pyqD 3pyrIContact Map
3kiu3kiud 3kiwJ 3kixd 3kiyJContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
46_Q 10_R 1.01 0.01
75_Q 148_V 0.91 0.01
113_Q 122_R 0.76 0.01
123_E 86_K 0.75 0.01
60_R 183_G 0.73 0.01
43_A 148_V 0.73 0.01
35_K 139_R 0.73 0.01
117_L 121_V 0.71 0.01
39_A 138_Y 0.71 0.01
108_K 204_I 0.70 0.01
42_Q 146_I 0.68 0.01
32_L 138_Y 0.68 0.01
46_Q 180_G 0.66 0.00
122_V 117_A 0.65 0.00
36_E 144_D 0.65 0.00
98_K 50_R 0.65 0.00
125_L 42_Q 0.65 0.00
60_R 47_R 0.65 0.00
4_K 159_R 0.63 0.00
136_A 206_F 0.62 0.00
144_A 187_R 0.62 0.00
75_Q 209_R 0.62 0.00
122_V 77_N 0.62 0.00
125_L 95_G 0.62 0.00
85_D 153_R 0.62 0.00
91_K 81_E 0.61 0.00
17_L 56_V 0.61 0.00
94_V 79_F 0.61 0.00
34_A 92_V 0.60 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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