May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L10 - L28
UniProt: Q8VVE3 - P60494
Length: 271
Sequences: 1188
Seq/Len: 5.12
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2j002j01J1 2j03J1Contact Map
4kix4kix5X 4kiz5X 4kj15X 4kj3XContact Map
4kj54kj55X 4kj7X 4kj95X 4kjbXContact Map
3i8f3i8fZ 3i8iYZContact Map
3sfs3sgfH1Contact Map
3d5a3d5bJ1 3d5dJ1Contact Map
3kiq3kirJ1 3kitJ1Contact Map
3pys3pytIX 3pyvIXContact Map
3pyn3pyoIX 3pyrIXContact Map
3kiu3kiwJ1 3kiyJ1Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
36_E 48_K 0.80 0.00
142_L 11_R 0.79 0.00
57_T 50_R 0.75 0.00
133_E 10_K 0.72 0.00
58_L 12_P 0.69 0.00
109_S 51_V 0.69 0.00
83_Y 17_S 0.69 0.00
55_K 35_T 0.68 0.00
46_Q 50_R 0.67 0.00
109_S 39_K 0.65 0.00
29_Y 35_T 0.65 0.00
149_L 7_I 0.64 0.00
16_N 60_F 0.64 0.00
11_A 62_V 0.63 0.00
159_E 68_P 0.61 0.00
13_L 46_L 0.61 0.00
130_T 74_V 0.60 0.00
144_A 39_K 0.60 0.00
108_K 53_V 0.60 0.00
9_L 50_R 0.60 0.00
128_L 59_T 0.59 0.00
59_I 11_R 0.59 0.00
158_R 39_K 0.59 0.00
136_A 40_R 0.58 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.307 seconds.