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OPENSEQ.org
L07 - S16
UniProt: Q8VVE2 - Q5SJH3
Length: 213
Sequences: 1377
Seq/Len: 6.56
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2j002j00P 2j01L 2j02P 2j03LContact Map
4kix4kix6 4kiyP 4kj0P 4kj2P 4kj4PContact Map
3i8f3i8gS 3i8hS 3i8iIJContact Map
3sfs3sfsP 3sgfLKMJContact Map
4kd84kd8P 4kd9e 4kdaP 4kdbeContact Map
4kcy4kcyP 4kcze 4kd0P 4kd2eContact Map
3uoq3uoqP 3uosKLMJContact Map
4kbt4kbtP 4kbue 4kbvP 4kbweContact Map
4kdg4kdgP 4kdhe 4kdjP 4kdkeContact Map
1yl31yl3IJ 1yl4SContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
23_L 27_K 0.57 0.00
38_P 3_K 0.55 0.00
73_E 2_V 0.52 0.00
72_L 76_Q 0.50 0.00
2_A 67_T 0.50 0.00
41_V 54_E 0.50 0.00
1_M 38_Y 0.49 0.00
43_A 67_T 0.49 0.00
117_A 75_R 0.48 0.00
94_E 57_R 0.48 0.00
4_D 14_N 0.48 0.00
110_E 65_Q 0.47 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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