May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L07 - S05
UniProt: Q8VVE2 - Q5SHQ5
Length: 287
Sequences: 1238
Seq/Len: 4.39
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2j002j00E 2j01L 2j02E 2j03LContact Map
4kix4kix6 4kiyE 4kj0E 4kj2E 4kj4EContact Map
3i8f3i8gH 3i8hH 3i8iIJContact Map
3sfs3sfsE 3sgfLKMJContact Map
4kd84kd8E 4kd9e 4kdaE 4kdbeContact Map
4kcy4kcyE 4kcze 4kd0E 4kd2eContact Map
3uoq3uoqE 3uosKLMJContact Map
4kbt4kbtE 4kbue 4kbvE 4kbweContact Map
4kdg4kdgE 4kdhe 4kdjE 4kdkeContact Map
1yl31yl3IJ 1yl4HContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
81_I 86_A 0.90 0.00
52_A 90_V 0.80 0.00
27_L 87_S 0.76 0.00
57_K 90_V 0.73 0.00
94_E 4_T 0.70 0.00
95_K 11_I 0.69 0.00
49_A 105_V 0.65 0.00
92_L 78_H 0.63 0.00
17_V 5_D 0.63 0.00
12_L 154_G 0.63 0.00
72_L 25_R 0.61 0.00
57_K 122_E 0.60 0.00
75_I 75_T 0.60 0.00
57_K 49_P 0.59 0.00
16_T 59_G 0.59 0.00
107_E 19_M 0.59 0.00
91_D 100_V 0.58 0.00
43_A 137_E 0.58 0.00
8_I 85_G 0.58 0.00
63_I 63_R 0.58 0.00
111_I 126_R 0.57 0.00
89_A 34_V 0.57 0.00
25_D 10_M 0.57 0.00
92_L 75_T 0.57 0.00
40_A 75_T 0.57 0.00
27_L 85_G 0.56 0.00
106_Q 116_T 0.56 0.00
8_I 120_T 0.56 0.00
124_L 155_E 0.55 0.00
80_A 91_L 0.55 0.00
53_P 142_L 0.55 0.00
70_K 61_Y 0.54 0.00
111_I 88_K 0.54 0.00
61_D 70_P 0.54 0.00
78_L 33_V 0.54 0.00
21_K 19_M 0.54 0.00
75_I 117_D 0.54 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.2278 seconds.