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OPENSEQ.org
L07 - S08
UniProt: Q8VVE2 - Q5SHQ2
Length: 263
Sequences: 1378
Seq/Len: 5.40
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2j002j00H 2j01L 2j02H 2j03LContact Map
4kix4kix6 4kiyH 4kj0H 4kj2H 4kj4HContact Map
3i8f3i8gK 3i8hK 3i8iIJContact Map
3sfs3sfsH 3sgfLKMJContact Map
4kd84kd8H 4kd9e 4kdaH 4kdbeContact Map
4kcy4kcyH 4kcze 4kd0H 4kd2eContact Map
3uoq3uoqH 3uosKLMJContact Map
4kbt4kbtH 4kbue 4kbvH 4kbweContact Map
4kdg4kdgH 4kdhe 4kdjH 4kdkeContact Map
1yl31yl3IJ 1yl4KContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
15_A 9_M 0.82 0.00
10_E 116_K 0.79 0.00
24_I 6_I 0.69 0.00
95_K 129_V 0.68 0.00
83_G 103_V 0.65 0.00
106_Q 127_L 0.64 0.00
21_K 105_R 0.63 0.00
37_A 24_T 0.59 0.00
31_W 120_T 0.59 0.00
3_L 135_C 0.58 0.00
103_V 16_A 0.57 0.00
13_S 49_E 0.57 0.00
117_A 127_L 0.57 0.00
81_I 93_V 0.56 0.00
74_V 61_V 0.55 0.00
51_A 119_L 0.54 0.00
27_L 95_V 0.54 0.00
1_M 95_V 0.53 0.00
10_E 104_R 0.53 0.00
117_A 52_D 0.53 0.00
97_G 104_R 0.52 0.00
18_L 60_R 0.51 0.00
16_T 3_T 0.51 0.00
70_K 138_W 0.51 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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