May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L07 - S19
UniProt: Q8VVE2 - Q5SHP2
Length: 218
Sequences: 1233
Seq/Len: 5.74
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2j002j00S 2j01L 2j02S 2j03LContact Map
4kix4kix6 4kiyS 4kj0S 4kj2S 4kj4SContact Map
3i8f3i8gV 3i8hV 3i8iIJContact Map
3sfs3sfsS 3sgfLKMJContact Map
4kd84kd8S 4kd9e 4kdaS 4kdbeContact Map
4kcy4kcyS 4kcze 4kd0S 4kd2eContact Map
3uoq3uoqS 3uosKLMJContact Map
4kbt4kbtS 4kbue 4kbvS 4kbweContact Map
4kdg4kdgS 4kdhe 4kdjS 4kdkeContact Map
1yl31yl3IJ 1yl4VContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
34_T 52_Y 0.95 0.01
113_K 53_N 0.74 0.01
54_A 21_E 0.70 0.01
27_L 52_Y 0.69 0.01
8_I 57_H 0.68 0.01
94_E 44_M 0.66 0.01
11_E 57_H 0.66 0.01
83_G 32_K 0.66 0.01
23_L 2_P 0.63 0.01
91_D 25_K 0.59 0.01
102_G 80_Y 0.59 0.01
69_A 75_A 0.58 0.01
21_K 44_M 0.58 0.00
2_A 52_Y 0.57 0.00
21_K 2_P 0.57 0.00
81_I 60_V 0.56 0.00
73_E 65_N 0.56 0.00
72_L 76_P 0.56 0.00
70_K 86_E 0.55 0.00
95_K 26_G 0.53 0.00
111_I 65_N 0.53 0.00
27_L 45_V 0.52 0.00
30_A 52_Y 0.52 0.00
26_A 32_K 0.51 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.7984 seconds.