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OPENSEQ.org
L07 - S10
UniProt: Q8VVE2 - Q5SHN7
Length: 230
Sequences: 1033
Seq/Len: 4.61
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2j002j00J 2j01L 2j02J 2j03LContact Map
4kix4kix6 4kiyJ 4kj0J 4kj2J 4kj4JContact Map
3i8f3i8gM 3i8hM 3i8iIJContact Map
3sfs3sfsJ 3sgfLKMJContact Map
4kd84kd8J 4kd9e 4kdaJ 4kdbeContact Map
4kcy4kcyJ 4kcze 4kd0J 4kd2eContact Map
3uoq3uoqJ 3uosKLMJContact Map
4kbt4kbtJ 4kbue 4kbvJ 4kbweContact Map
4kdg4kdgJ 4kdhe 4kdjJ 4kdkeContact Map
1yl31yl3IJ 1yl4MContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
94_E 97_E 0.86 0.00
16_T 98_I 0.77 0.00
106_Q 47_F 0.77 0.00
8_I 35_S 0.72 0.00
12_L 96_I 0.71 0.00
94_E 13_H 0.70 0.00
65_K 48_T 0.69 0.00
106_Q 35_S 0.66 0.00
8_I 15_T 0.65 0.00
9_K 72_V 0.65 0.00
70_K 79_R 0.63 0.00
65_K 3_K 0.63 0.00
124_L 95_E 0.62 0.00
95_K 26_A 0.62 0.00
41_V 75_I 0.62 0.00
80_A 84_Q 0.61 0.00
61_D 6_I 0.61 0.00
27_L 45_R 0.60 0.00
27_L 92_T 0.58 0.00
106_Q 20_A 0.58 0.00
12_L 45_R 0.58 0.00
20_L 56_H 0.58 0.00
116_E 27_A 0.57 0.00
121_V 13_H 0.57 0.00
100_K 16_L 0.56 0.00
43_A 78_N 0.56 0.00
13_S 44_V 0.56 0.00
27_L 38_I 0.56 0.00
79_R 26_A 0.55 0.00
22_Q 78_N 0.55 0.00
63_I 12_D 0.55 0.00
9_K 79_R 0.55 0.00
96_G 11_F 0.55 0.00
34_T 30_S 0.54 0.00
8_I 27_A 0.54 0.00
57_K 59_S 0.54 0.00
32_G 93_G 0.54 0.00
94_E 10_G 0.53 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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