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OPENSEQ.org
L07 - S11
UniProt: Q8VVE2 - P80376
Length: 254
Sequences: 1124
Seq/Len: 4.46
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2j002j00K 2j01L 2j02K 2j03LContact Map
4kix4kix6 4kiyK 4kj0K 4kj2K 4kj4KContact Map
3i8f3i8gN 3i8hN 3i8iIJContact Map
3sfs3sfsK 3sgfLKMJContact Map
4kd84kd8K 4kd9e 4kdaK 4kdbeContact Map
4kcy4kcyK 4kcze 4kd0K 4kd2eContact Map
3uoq3uoqK 3uosKLMJContact Map
4kbt4kbtK 4kbue 4kbvK 4kbweContact Map
4kdg4kdgK 4kdhe 4kdjK 4kdkeContact Map
1yl31yl3IJ 1yl4NContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
58_T 30_V 0.81 0.00
99_V 65_A 0.76 0.00
80_A 115_P 0.71 0.00
87_K 125_F 0.69 0.00
111_I 9_K 0.66 0.00
27_L 67_D 0.66 0.00
44_A 105_V 0.66 0.00
73_E 39_P 0.66 0.00
8_I 81_D 0.65 0.00
27_L 47_V 0.65 0.00
75_I 34_D 0.64 0.00
37_A 54_R 0.64 0.00
46_A 33_T 0.64 0.00
70_K 93_Q 0.64 0.00
7_R 82_V 0.63 0.00
22_Q 114_V 0.63 0.00
51_A 30_V 0.62 0.00
7_R 35_P 0.61 0.00
99_V 59_Y 0.61 0.00
15_A 29_I 0.60 0.00
91_D 78_Q 0.60 0.00
16_T 121_P 0.60 0.00
38_P 96_R 0.59 0.00
13_S 39_P 0.59 0.00
36_A 92_E 0.58 0.00
102_G 64_A 0.57 0.00
96_G 24_S 0.57 0.00
100_K 54_R 0.57 0.00
60_F 125_F 0.55 0.00
55_E 78_Q 0.55 0.00
19_E 68_A 0.55 0.00
79_R 54_R 0.54 0.00
18_L 13_Q 0.54 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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