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OPENSEQ.org
L07 - L20
UniProt: Q8VVE2 - P60491
Length: 243
Sequences: 1234
Seq/Len: 5.10
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2j002j01LU 2j03LUContact Map
4kix4kix6Q 4kizQ 4kj1Q 4kj3QContact Map
3i8f3i8f1 3i8iIJ1Contact Map
3sfs3sgfLKMJUContact Map
2zjq2zjq5NContact Map
4kcy4kczeU 4kd2eUContact Map
4kd84kd9eU 4kdbeUContact Map
3uoq3uosKLMJUContact Map
4kbt4kbueU 4kbweUContact Map
4kdg4kdheU 4kdkeUContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
94_E 93_K 0.80 0.00
27_L 38_T 0.68 0.00
70_K 41_A 0.67 0.00
91_D 46_A 0.61 0.00
38_P 56_D 0.61 0.00
11_E 41_A 0.60 0.00
27_L 9_V 0.58 0.00
27_L 41_A 0.57 0.00
106_Q 68_A 0.57 0.00
15_A 37_E 0.55 0.00
17_V 14_H 0.55 0.00
94_E 2_P 0.54 0.00
39_V 19_K 0.54 0.00
79_R 47_Y 0.53 0.00
13_S 31_S 0.53 0.00
51_A 111_E 0.53 0.00
120_A 12_R 0.53 0.00
20_L 40_F 0.52 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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