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OPENSEQ.org
L09 - L14
UniProt: Q5SLQ1 - Q5SHP8
Length: 270
Sequences: 1300
Seq/Len: 4.83
I_Prob: 0.02
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dIO 3v2fIOContact Map
2j002j01IO 2j03IOContact Map
4kix4kixHK 4kizHK 4kj1HK 4kj3HKContact Map
4kj54kj5HK 4kj7HK 4kj9HK 4kjbHKContact Map
3uyd3uyeKN 3uygKNContact Map
4gd13r8sHK 3r8tHKContact Map
3ohc3ohjIO 3ohkIOContact Map
3knh3kniIO 3knkIOContact Map
3ohy3ohzIO 3oi1IOContact Map
3f1e3f1fIO 3f1hIOContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
22_K 92_E 0.99 0.02
83_A 32_Y 0.90 0.01
121_K 14_T 0.89 0.01
47_L 122_L 0.87 0.01
87_K 73_D 0.87 0.01
138_I 122_L 0.78 0.01
86_T 98_V 0.77 0.01
34_G 89_N 0.77 0.01
62_K 28_S 0.75 0.01
4_I 106_L 0.71 0.01
33_R 87_I 0.71 0.01
93_T 111_F 0.71 0.01
132_P 17_R 0.71 0.01
113_R 98_V 0.70 0.01
142_V 78_R 0.70 0.01
125_E 17_R 0.69 0.01
99_E 102_V 0.68 0.01
60_E 86_I 0.68 0.01
16_G 93_P 0.68 0.01
12_L 14_T 0.67 0.01
25_Y 78_R 0.67 0.01
12_L 67_K 0.67 0.01
1_M 68_E 0.67 0.01
89_Y 70_K 0.66 0.01
44_L 6_T 0.66 0.01
20_D 9_E 0.66 0.01
60_E 110_G 0.66 0.01
65_A 106_L 0.65 0.01
137_P 111_F 0.65 0.01
66_E 65_T 0.64 0.01
23_P 28_S 0.64 0.01
3_V 86_I 0.64 0.01
123_L 19_I 0.63 0.01
133_H 75_S 0.63 0.01
140_L 78_R 0.63 0.01
42_S 59_K 0.63 0.01
137_P 78_R 0.62 0.01
29_Y 112_M 0.62 0.01
138_I 5_Q 0.62 0.01
92_V 29_N 0.62 0.01
11_N 87_I 0.62 0.01
119_P 84_A 0.62 0.01
2_K 90_Q 0.62 0.01
1_M 21_C 0.61 0.01
75_L 6_T 0.60 0.01
48_E 6_T 0.60 0.01
106_G 70_K 0.60 0.01
55_A 113_K 0.60 0.01
128_L 38_V 0.60 0.01
93_T 66_K 0.60 0.01
87_K 111_F 0.60 0.01
89_Y 76_A 0.59 0.01
93_T 10_V 0.59 0.01
116_L 17_R 0.59 0.01
117_E 43_V 0.59 0.01
95_K 34_T 0.59 0.01
5_L 117_L 0.59 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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