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OPENSEQ.org
L09 - S12
UniProt: Q5SLQ1 - Q5SHN3
Length: 280
Sequences: 1270
Seq/Len: 4.69
I_Prob: 0.05
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cL 3v2dI 3v2eL 3v2fIContact Map
2j002j00L 2j01I 2j02L 2j03IContact Map
4kix4kixH 4kiyL 4kizH 4kj0L 4kj1H 4kj2L 4kj3H 4kj4LContact Map
4kj54kj5H 4kj6L 4kj7H 4kj8L 4kj9H 4kjaL 4kjbH 4kjcLContact Map
3uyd3uydO 3uyeK 3uyfO 3uygKContact Map
4gd13r8sH 3r8tH 4gd1L 4gd2LContact Map
3ohc3ohcL 3ohdL 3ohjI 3ohkIContact Map
3knh3knhL 3kniI 3knjL 3knkIContact Map
3ohy3ohyL 3ohzI 3oi0L 3oi1IContact Map
3f1e3f1eL 3f1fI 3f1gL 3f1hIContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
83_A 122_P 1.06 0.05
112_K 65_A 0.99 0.04
50_R 79_V 0.94 0.04
113_R 59_S 0.93 0.04
80_P 8_V 0.87 0.03
72_L 80_V 0.84 0.03
34_G 70_E 0.84 0.03
93_T 2_P 0.83 0.03
93_T 116_K 0.82 0.02
111_P 29_F 0.82 0.02
133_H 70_E 0.82 0.02
140_L 14_K 0.79 0.02
2_K 97_I 0.79 0.02
96_D 52_V 0.79 0.02
41_E 121_K 0.79 0.02
113_R 2_P 0.78 0.02
95_K 101_V 0.78 0.02
91_S 19_S 0.78 0.02
83_A 64_T 0.76 0.02
83_A 56_R 0.76 0.02
23_P 121_K 0.75 0.02
12_L 52_V 0.75 0.02
69_K 53_A 0.74 0.02
33_R 17_K 0.74 0.02
43_N 82_I 0.74 0.02
102_S 27_A 0.74 0.02
23_P 98_V 0.73 0.02
32_P 9_R 0.72 0.02
2_K 5_N 0.72 0.02
142_V 5_N 0.72 0.02
26_A 30_R 0.72 0.02
29_Y 111_K 0.71 0.02
6_L 70_E 0.71 0.02
14_D 79_V 0.70 0.02
127_V 16_R 0.70 0.02
121_K 52_V 0.70 0.02
126_Y 52_V 0.70 0.02
44_L 79_V 0.69 0.01
96_D 38_R 0.68 0.01
29_Y 26_G 0.68 0.01
17_Q 123_K 0.67 0.01
39_A 29_F 0.67 0.01
134_P 58_T 0.67 0.01
112_K 53_A 0.67 0.01
25_Y 43_K 0.67 0.01
25_Y 106_G 0.67 0.01
27_R 60_G 0.66 0.01
55_A 121_K 0.66 0.01
59_A 26_G 0.66 0.01
121_K 11_G 0.66 0.01
144_V 65_A 0.66 0.01
134_P 8_V 0.66 0.01
68_L 53_A 0.65 0.01
52_R 30_R 0.65 0.01
73_E 53_A 0.65 0.01
136_V 122_P 0.65 0.01
1_M 107_V 0.65 0.01
4_I 36_V 0.64 0.01
65_A 8_V 0.64 0.01
128_L 13_E 0.64 0.01
87_K 9_R 0.63 0.01
89_Y 18_K 0.63 0.01
144_V 56_R 0.62 0.01
22_K 40_V 0.62 0.01
27_R 108_K 0.62 0.01
95_K 53_A 0.62 0.01
42_S 54_K 0.62 0.01
96_D 65_A 0.62 0.01
4_I 94_R 0.62 0.01
47_L 122_P 0.62 0.01
65_A 94_R 0.61 0.01
3_V 121_K 0.61 0.01
36_A 93_V 0.61 0.01
71_I 61_Y 0.61 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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