May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L09 - S02
UniProt: Q5SLQ1 - P80371
Length: 404
Sequences: 1290
Seq/Len: 3.44
I_Prob: 0.13
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cB 3v2dI 3v2eB 3v2fIContact Map
2j002j00B 2j01I 2j02B 2j03IContact Map
4kix4kixH 4kiyB 4kizH 4kj0B 4kj1H 4kj2B 4kj3H 4kj4BContact Map
4kj54kj5H 4kj6B 4kj7H 4kj8B 4kj9H 4kjaB 4kjbH 4kjcBContact Map
3uyd3uydE 3uyeK 3uyfE 3uygKContact Map
4gd13r8sH 3r8tH 4gd1B 4gd2BContact Map
3knh3knhB 3kniI 3knjB 3knkIContact Map
3ohc3ohcB 3ohdB 3ohjI 3ohkIContact Map
3f1e3f1eB 3f1fI 3f1gB 3f1hIContact Map
3ohy3ohyB 3ohzI 3oi0B 3oi1IContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
22_K 140_H 1.19 0.13
29_Y 58_I 1.10 0.10
1_M 198_D 1.01 0.08
103_R 58_I 0.97 0.07
107_V 197_V 0.94 0.06
19_V 30_R 0.94 0.06
126_Y 101_M 0.90 0.05
11_N 83_M 0.90 0.05
96_D 101_M 0.89 0.05
147_Q 13_A 0.89 0.05
138_I 174_V 0.88 0.05
66_E 178_R 0.87 0.05
144_V 59_E 0.83 0.04
45_K 31_Y 0.81 0.04
12_L 140_H 0.81 0.04
47_L 118_L 0.81 0.04
97_I 213_L 0.81 0.04
22_K 31_Y 0.80 0.04
64_E 68_I 0.78 0.03
29_Y 169_K 0.77 0.03
142_V 158_L 0.76 0.03
31_L 185_I 0.76 0.03
32_P 203_G 0.76 0.03
27_R 203_G 0.76 0.03
132_P 12_E 0.76 0.03
31_L 30_R 0.75 0.03
94_A 92_Y 0.74 0.03
79_I 47_T 0.73 0.03
48_E 165_V 0.72 0.03
19_V 101_M 0.71 0.03
70_E 86_E 0.71 0.03
81_V 90_M 0.71 0.03
47_L 140_H 0.71 0.03
112_K 38_G 0.71 0.03
96_D 88_A 0.70 0.03
96_D 197_V 0.70 0.02
37_V 6_T 0.70 0.02
93_T 59_E 0.69 0.02
92_V 50_E 0.69 0.02
10_E 211_I 0.68 0.02
112_K 101_M 0.68 0.02
109_I 172_I 0.67 0.02
83_A 203_G 0.67 0.02
88_I 218_A 0.67 0.02
47_L 124_S 0.67 0.02
120_I 216_S 0.66 0.02
5_L 101_M 0.66 0.02
139_Q 29_A 0.66 0.02
33_R 64_R 0.66 0.02
3_V 71_V 0.65 0.02
142_V 212_Q 0.65 0.02
110_D 78_Q 0.65 0.02
121_K 46_K 0.65 0.02
121_K 76_Q 0.65 0.02
32_P 101_M 0.65 0.02
6_L 94_N 0.65 0.02
92_V 192_S 0.65 0.02
109_I 125_P 0.64 0.02
36_A 173_A 0.64 0.02
112_K 86_E 0.64 0.02
127_V 207_A 0.64 0.02
123_L 93_V 0.63 0.02
96_D 203_G 0.63 0.02
110_D 224_Q 0.63 0.02
75_L 81_V 0.63 0.02
49_A 95_Q 0.63 0.02
69_K 162_I 0.63 0.02
111_P 67_T 0.62 0.02
129_T 143_E 0.62 0.02
116_L 225_A 0.62 0.02
50_R 59_E 0.62 0.02
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.8076 seconds.