May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
S06 - S13
UniProt: Q5SLP8 - P80377
Length: 227
Sequences: 1078
Seq/Len: 4.86
I_Prob: 0.03
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2vqe2vqeFMContact Map
3v2c3v2cFM 3v2eFMContact Map
2uub2uubFMContact Map
2j002j00FM 2j02FMContact Map
3t1y3t1yFMContact Map
4juw4juwFMContact Map
2uua2uuaFMContact Map
4b3m4b3mFMContact Map
2uxc2uxcFMContact Map
4kix4kiyFM 4kj0FM 4kj2FM 4kj4FMContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
80_R 85_G 1.02 0.03
57_Q 84_I 0.95 0.02
58_G 20_T 0.94 0.02
83_D 65_K 0.88 0.02
9_V 76_A 0.83 0.02
6_V 90_L 0.82 0.02
72_V 25_I 0.81 0.02
79_L 61_E 0.78 0.01
92_K 13_K 0.76 0.01
3_R 104_R 0.75 0.01
89_M 81_L 0.75 0.01
45_L 82_M 0.73 0.01
29_A 90_L 0.72 0.01
9_V 11_R 0.71 0.01
89_M 88_R 0.71 0.01
47_R 12_N 0.71 0.01
10_L 84_I 0.69 0.01
49_A 39_I 0.68 0.01
88_V 52_E 0.67 0.01
93_S 52_E 0.67 0.01
75_L 59_Y 0.67 0.01
81_I 95_G 0.66 0.01
17_S 81_L 0.65 0.01
40_V 113_P 0.64 0.01
47_R 104_R 0.64 0.01
27_Q 18_A 0.64 0.01
61_L 105_T 0.64 0.01
87_R 118_A 0.63 0.01
10_L 27_K 0.63 0.01
84_N 44_R 0.63 0.01
51_P 47_D 0.63 0.01
65_V 115_K 0.62 0.01
7_N 50_E 0.62 0.01
2_R 90_L 0.62 0.01
64_Q 72_A 0.62 0.01
64_Q 65_K 0.62 0.01
87_R 44_R 0.62 0.01
45_L 102_R 0.61 0.01
57_Q 12_N 0.61 0.01
92_K 98_V 0.61 0.01
67_M 84_I 0.61 0.01
95_E 86_C 0.61 0.01
43_L 73_E 0.61 0.01
38_E 25_I 0.61 0.01
94_Q 21_Y 0.61 0.01
43_L 117_V 0.61 0.01
62_W 74_V 0.60 0.01
90_V 50_E 0.60 0.01
80_R 29_R 0.60 0.01
81_I 15_V 0.60 0.01
41_E 111_K 0.59 0.01
68_P 37_T 0.59 0.01
88_V 33_A 0.59 0.01
19_L 49_T 0.58 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 1.1716 seconds.