May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L01 - L17
UniProt: Q5SLP7 - Q9Z9H5
Length: 347
Sequences: 1356
Seq/Len: 3.93
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2j002j01CR 2j03CRContact Map
4juw4juxCRContact Map
4btc4btdCRContact Map
3knh3kniCR 3knkCRContact Map
2y142y15CR 2y17CRContact Map
3huw3huxCR 3huzCRContact Map
2y0u2y0vCR 2y0xCRContact Map
2xqd2xqeCRContact Map
2y102y11CR 2y19CRContact Map
2x9r2x9sCR 2x9uCRContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
171_A 40_K 0.88 0.00
171_A 20_L 0.80 0.00
122_G 101_A 0.78 0.00
224_R 9_K 0.77 0.00
43_E 87_Y 0.71 0.00
106_D 108_G 0.70 0.00
72_Q 98_L 0.68 0.00
175_P 108_G 0.68 0.00
32_E 35_T 0.63 0.00
216_T 23_N 0.63 0.00
150_I 15_S 0.63 0.00
218_T 106_G 0.63 0.00
185_K 76_V 0.62 0.00
100_I 55_A 0.61 0.00
216_T 40_K 0.61 0.00
131_I 29_L 0.60 0.00
71_K 48_V 0.59 0.00
154_I 91_Q 0.59 0.00
78_I 112_A 0.59 0.00
85_K 29_L 0.59 0.00
164_F 115_E 0.58 0.00
97_G 29_L 0.58 0.00
129_G 80_F 0.58 0.00
28_R 50_H 0.58 0.00
53_R 98_L 0.58 0.00
53_R 40_K 0.57 0.00
205_A 32_G 0.57 0.00
190_I 91_Q 0.57 0.00
89_E 65_L 0.56 0.00
170_G 39_P 0.56 0.00
126_S 46_G 0.56 0.00
64_S 43_E 0.56 0.00
143_A 30_T 0.55 0.00
37_K 111_L 0.55 0.00
211_R 79_L 0.55 0.00
26_A 109_A 0.55 0.00
122_G 81_D 0.55 0.00
128_L 56_K 0.55 0.00
20_V 20_L 0.54 0.00
22_T 29_L 0.53 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.3121 seconds.