May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L01 - S05
UniProt: Q5SLP7 - Q5SHQ5
Length: 391
Sequences: 1523
Seq/Len: 3.97
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2j002j00E 2j01C 2j02E 2j03CContact Map
4juw4juwE 4juxCContact Map
3knh3knhE 3kniC 3knjE 3knkCContact Map
2y102y10E 2y11C 2y18E 2y19CContact Map
3zn73zn7E 3zn9C 3zndE 3zneCContact Map
2y142y14E 2y15C 2y16E 2y17CContact Map
3huw3huwE 3huxC 3huyE 3huzCContact Map
2y0u2y0uE 2y0vC 2y0wE 2y0xCContact Map
2xqd2xqdE 2xqeCContact Map
2x9r2x9rE 2x9sC 2x9tE 2x9uCContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
129_G 130_N 0.85 0.00
191_R 117_D 0.85 0.00
130_R 157_H 0.85 0.00
17_P 17_A 0.78 0.00
54_R 145_K 0.75 0.00
61_G 50_E 0.73 0.00
93_D 112_L 0.73 0.00
186_L 147_D 0.70 0.00
185_K 136_M 0.69 0.00
143_A 133_Y 0.68 0.00
61_G 36_D 0.66 0.00
161_R 58_A 0.66 0.00
200_H 36_D 0.65 0.00
106_D 5_D 0.65 0.00
212_S 49_P 0.65 0.00
7_R 123_L 0.64 0.00
115_V 105_V 0.64 0.00
74_R 135_T 0.63 0.00
23_I 133_Y 0.63 0.00
80_K 38_Q 0.62 0.00
220_G 48_A 0.62 0.00
13_E 146_A 0.62 0.00
120_V 95_A 0.62 0.00
204_G 147_D 0.61 0.00
109_M 76_I 0.61 0.00
80_K 56_Q 0.61 0.00
15_V 143_R 0.61 0.00
167_D 8_E 0.61 0.00
73_V 83_E 0.61 0.00
135_R 41_V 0.61 0.00
131_I 71_L 0.60 0.00
178_K 58_A 0.60 0.00
197_L 95_A 0.60 0.00
194_I 127_N 0.60 0.00
124_V 20_Q 0.60 0.00
228_H 115_V 0.60 0.00
18_N 91_L 0.60 0.00
171_A 16_T 0.60 0.00
46_A 33_V 0.60 0.00
152_E 132_A 0.59 0.00
19_K 141_Q 0.59 0.00
216_T 105_V 0.59 0.00
193_F 29_G 0.59 0.00
5_G 138_A 0.58 0.00
164_F 138_A 0.58 0.00
11_L 144_T 0.58 0.00
42_V 70_P 0.58 0.00
199_A 16_T 0.58 0.00
20_V 142_L 0.58 0.00
62_T 126_R 0.58 0.00
205_A 128_P 0.58 0.00
98_E 127_N 0.58 0.00
50_I 87_S 0.58 0.00
26_A 89_I 0.58 0.00
88_E 5_D 0.58 0.00
44_V 73_N 0.58 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.4854 seconds.