May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L01 - L29
UniProt: Q5SLP7 - Q5SHP6
Length: 301
Sequences: 1121
Seq/Len: 3.85
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2j002j01C2 2j03C2Contact Map
4juw4juxC2Contact Map
4btc4btdC2Contact Map
3knh3kniC2 3knkC2Contact Map
2y102y11C2 2y19C2Contact Map
3zn73zn9C2 3zneC2Contact Map
2y142y15C2 2y17C2Contact Map
3huw3huxC2 3huzC2Contact Map
2y0u2y0vC2 2y0xC2Contact Map
2xqd2xqeC2Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
120_V 37_F 0.85 0.00
43_E 29_K 0.82 0.00
78_I 25_V 0.82 0.00
42_V 51_R 0.81 0.00
5_G 46_Q 0.80 0.00
135_R 41_I 0.73 0.00
69_L 40_S 0.70 0.00
123_A 16_L 0.70 0.00
164_F 39_A 0.69 0.00
216_T 55_R 0.68 0.00
137_L 64_L 0.67 0.00
78_I 41_I 0.66 0.00
49_G 54_K 0.65 0.00
165_R 42_G 0.65 0.00
161_R 32_L 0.63 0.00
25_E 20_E 0.62 0.00
126_S 23_K 0.62 0.00
45_H 28_K 0.62 0.00
219_M 25_V 0.60 0.00
199_A 55_R 0.60 0.00
115_V 24_L 0.60 0.00
47_K 30_R 0.60 0.00
43_E 35_L 0.59 0.00
76_L 50_I 0.59 0.00
69_L 29_K 0.59 0.00
100_I 13_A 0.59 0.00
142_K 16_L 0.59 0.00
55_S 29_K 0.59 0.00
183_P 13_A 0.58 0.00
119_D 36_R 0.58 0.00
162_I 42_G 0.57 0.00
81_G 10_L 0.57 0.00
35_T 25_V 0.57 0.00
143_A 42_G 0.56 0.00
162_I 34_E 0.56 0.00
154_I 59_R 0.56 0.00
156_E 16_L 0.55 0.00
184_E 20_E 0.55 0.00
224_R 60_L 0.55 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 1.7515 seconds.