May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L01 - S04
UniProt: Q5SLP7 - P80373
Length: 438
Sequences: 1221
Seq/Len: 2.81
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2j002j00D 2j01C 2j02D 2j03CContact Map
4juw4juwD 4juxCContact Map
3knh3knhD 3kniC 3knjD 3knkCContact Map
2y102y10D 2y11C 2y18D 2y19CContact Map
3zn73zn7D 3zn9C 3zndD 3zneCContact Map
2y142y14D 2y15C 2y16D 2y17CContact Map
3huw3huwD 3huxC 3huyD 3huzCContact Map
2y0u2y0uD 2y0vC 2y0wD 2y0xCContact Map
2xqd2xqdD 2xqeCContact Map
2x9r2x9rD 2x9sC 2x9tD 2x9uCContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
15_V 138_Y 1.02 0.01
104_I 201_Q 0.90 0.01
180_S 130_G 0.83 0.01
114_V 10_R 0.83 0.01
5_G 5_I 0.81 0.01
44_V 83_S 0.77 0.00
170_G 158_I 0.77 0.00
201_K 76_R 0.74 0.00
120_V 55_A 0.73 0.00
164_F 159_R 0.73 0.00
215_V 192_E 0.71 0.00
23_I 147_A 0.71 0.00
26_A 39_P 0.69 0.00
47_K 209_R 0.69 0.00
22_T 140_V 0.69 0.00
21_Y 70_I 0.69 0.00
128_L 155_L 0.69 0.00
9_R 79_F 0.68 0.00
25_E 56_V 0.67 0.00
15_V 131_R 0.67 0.00
201_K 139_R 0.66 0.00
193_F 193_D 0.66 0.00
173_H 10_R 0.65 0.00
102_Q 77_N 0.65 0.00
166_N 204_I 0.65 0.00
156_E 88_V 0.65 0.00
7_R 148_V 0.64 0.00
47_K 79_F 0.64 0.00
99_E 159_R 0.63 0.00
161_R 203_V 0.62 0.00
141_P 91_S 0.62 0.00
64_S 55_A 0.62 0.00
99_E 117_A 0.62 0.00
13_E 146_I 0.61 0.00
167_D 103_N 0.61 0.00
59_V 89_T 0.61 0.00
102_Q 141_R 0.60 0.00
109_M 164_A 0.60 0.00
173_H 174_L 0.60 0.00
9_R 134_D 0.60 0.00
155_R 160_Q 0.60 0.00
165_R 204_I 0.60 0.00
22_T 73_R 0.60 0.00
36_A 132_R 0.59 0.00
89_E 154_N 0.59 0.00
134_P 44_G 0.59 0.00
9_R 142_P 0.59 0.00
16_D 143_G 0.59 0.00
58_N 201_Q 0.59 0.00
78_I 21_L 0.59 0.00
45_H 38_Y 0.58 0.00
210_L 81_E 0.58 0.00
197_L 96_L 0.58 0.00
13_E 77_N 0.58 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 1.375 seconds.