May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L11 - L36
UniProt: Q5SLP6 - Q5SHR2
Length: 184
Sequences: 684
Seq/Len: 3.89
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
4juw4juxK9Contact Map
4kix4kixI4 4kizI4 4kj1I4 4kj3I4Contact Map
4kj54kj5I4 4kj7I4 4kj9I4 4kjbI4Contact Map
2zjr2zjrF4Contact Map
4gd13r8sI4 3r8tI4Contact Map
1nkw1nkwG4Contact Map
3ofo3ofqI4 3ofrI4Contact Map
2x9r2x9sK9 2x9uK9Contact Map
3i1m3i1nI4 3i1pI4Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
64_S 30_P 0.98 0.01
44_A 31_K 0.97 0.01
20_A 12_D 0.88 0.01
46_A 5_A 0.74 0.01
13_P 9_R 0.71 0.01
110_Q 16_V 0.70 0.01
16_K 18_R 0.69 0.01
103_Q 10_I 0.69 0.01
124_A 30_P 0.66 0.00
100_T 16_V 0.64 0.00
100_T 35_R 0.62 0.00
103_Q 9_R 0.61 0.00
52_I 13_K 0.60 0.00
93_R 24_Y 0.60 0.00
77_L 32_H 0.59 0.00
61_A 5_A 0.59 0.00
77_L 7_V 0.59 0.00
20_A 22_R 0.59 0.00
99_I 5_A 0.58 0.00
23_V 4_R 0.58 0.00
41_F 4_R 0.58 0.00
12_L 29_N 0.57 0.00
116_N 12_D 0.55 0.00
90_K 25_V 0.54 0.00
134_M 17_I 0.54 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 5.9481 seconds.