May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L11 - L22
UniProt: Q5SLP6 - Q5SHP3
Length: 260
Sequences: 1325
Seq/Len: 5.28
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoIRContact Map
1vq81vq8IRContact Map
1vqp1vqpIRContact Map
1vqm1vqmIRContact Map
1vql1vqlIRContact Map
1vqk1vqkIRContact Map
1yhq1yhqIRContact Map
1s721s72IRContact Map
1vq91vq9IRContact Map
1vqn1vqnIRContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
40_A 89_A 0.71 0.00
69_T 15_R 0.70 0.00
97_G 42_R 0.69 0.00
127_I 63_D 0.69 0.00
16_K 12_I 0.64 0.00
41_F 48_A 0.64 0.00
40_A 81_A 0.61 0.00
13_P 62_H 0.61 0.00
44_A 20_V 0.60 0.00
78_I 19_L 0.59 0.00
88_A 101_S 0.58 0.00
41_F 90_R 0.58 0.00
78_I 2_E 0.58 0.00
138_V 64_M 0.58 0.00
59_I 85_V 0.58 0.00
80_K 37_R 0.57 0.00
86_K 63_D 0.57 0.00
121_E 24_I 0.57 0.00
41_F 19_L 0.57 0.00
108_A 92_R 0.57 0.00
41_F 41_K 0.54 0.00
12_L 111_H 0.54 0.00
120_L 45_Y 0.54 0.00
120_L 65_L 0.54 0.00
76_Y 61_N 0.53 0.00
101_W 60_N 0.53 0.00
99_I 21_V 0.53 0.00
64_S 103_I 0.53 0.00
137_E 43_G 0.53 0.00
20_A 38_Y 0.53 0.00
13_P 74_A 0.52 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 1.1999 seconds.