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OPENSEQ.org

L11 - L32
UniProt: Q5SLP6 - P80339
Length: 207
Sequences: 796
Seq/Len: 4.06
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2j002j01K5 2j03K5Contact Map
4juw4juxK5Contact Map
4kix4kixI0 4kizI0 4kj1I0 4kj3I0Contact Map
4kj54kj5I0 4kj7I0 4kj9I0 4kjbI0Contact Map
2zjr2zjrFZContact Map
4gd13r8sI0 3r8tI0Contact Map
3f1e3f1fK5 3f1hK5Contact Map
3i8f3i8f5 3i8iL5Contact Map
1nkw1nkwGZContact Map
3ofo3ofqI0 3ofrI0Contact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
12_L 16_R 0.97 0.01
50_D 5_P 0.88 0.01
56_E 8_K 0.77 0.01
38_V 40_K 0.74 0.01
50_D 4_H 0.73 0.01
36_E 8_K 0.71 0.01
79_R 45_V 0.69 0.01
52_I 23_H 0.69 0.01
76_Y 13_K 0.68 0.01
38_V 41_P 0.63 0.00
32_A 17_D 0.62 0.00
109_K 10_K 0.59 0.00
79_R 56_K 0.58 0.00
7_V 16_R 0.58 0.00
47_N 29_T 0.57 0.00
118_T 6_V 0.57 0.00
134_M 12_S 0.57 0.00
23_V 44_T 0.57 0.00
18_T 22_H 0.56 0.00
82_A 12_S 0.55 0.00
4_V 56_K 0.55 0.00
12_L 22_H 0.55 0.00
40_A 16_R 0.54 0.00
103_Q 55_R 0.54 0.00
14_A 56_K 0.54 0.00
117_T 11_T 0.54 0.00
46_A 9_K 0.53 0.00
6_A 35_E 0.53 0.00
117_T 10_K 0.53 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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