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OPENSEQ.org
L35 - S10
UniProt: Q5SKU1 - Q5SHN7
Length: 170
Sequences: 787
Seq/Len: 4.83
I_Prob: 0.12
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cJ 3v2d8 3v2eJ 3v2f8Contact Map
2j002j00J 2j018 2j02J 2j038Contact Map
4juw4juwJ 4jux8Contact Map
4kix4kix3 4kiyJ 4kiz3 4kj0J 4kj13 4kj2J 4kj33 4kj4JContact Map
4kj54kj53 4kj6J 4kj73 4kj8J 4kj93 4kjaJ 4kjb3 4kjcJContact Map
3uyd3uydM 3uye8 3uyfM 3uyg8Contact Map
4gd13r8s3 3r8t3 4gd1J 4gd2JContact Map
3ohc3ohcJ 3ohdJ 3ohj8 3ohk8Contact Map
3knh3knhJ 3kni8 3knjJ 3knk8Contact Map
3f1e3f1eJ 3f1f8 3f1gJ 3f1h8Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
63_P 11_F 1.13 0.12
44_K 50_I 1.08 0.10
45_G 62_H 1.06 0.10
7_H 72_V 1.03 0.09
7_H 58_D 0.96 0.07
16_I 21_Q 0.91 0.06
38_G 16_L 0.89 0.05
33_N 9_R 0.88 0.05
17_T 69_N 0.87 0.05
63_P 27_A 0.86 0.05
4_M 65_L 0.85 0.05
8_K 49_V 0.85 0.05
15_K 65_L 0.85 0.05
14_V 88_L 0.84 0.05
41_I 18_A 0.78 0.04
39_K 31_G 0.77 0.04
27_T 87_T 0.77 0.04
60_L 75_I 0.77 0.04
38_G 53_P 0.76 0.03
32_L 92_T 0.76 0.03
64_Y 27_A 0.75 0.03
4_M 46_R 0.74 0.03
45_G 49_V 0.73 0.03
17_T 58_D 0.73 0.03
12_K 10_G 0.73 0.03
32_L 12_D 0.72 0.03
27_T 59_S 0.72 0.03
51_A 79_R 0.72 0.03
9_G 13_H 0.71 0.03
20_G 70_R 0.71 0.03
52_K 11_F 0.70 0.03
53_P 10_G 0.70 0.03
17_T 72_V 0.70 0.03
40_E 22_K 0.69 0.03
47_K 53_P 0.69 0.03
42_R 98_I 0.69 0.03
25_M 99_K 0.68 0.03
56_E 33_Q 0.68 0.03
40_E 61_E 0.68 0.02
16_I 43_R 0.67 0.02
27_T 83_E 0.67 0.02
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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