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OPENSEQ.org
L35 - S04
UniProt: Q5SKU1 - P80373
Length: 274
Sequences: 1107
Seq/Len: 4.07
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cD 3v2d8 3v2eD 3v2f8Contact Map
2j002j00D 2j018 2j02D 2j038Contact Map
4juw4juwD 4jux8Contact Map
4kix4kix3 4kiyD 4kiz3 4kj0D 4kj13 4kj2D 4kj33 4kj4DContact Map
4kj54kj53 4kj6D 4kj73 4kj8D 4kj93 4kjaD 4kjb3 4kjcDContact Map
3uyd3uydG 3uye8 3uyfG 3uyg8Contact Map
4gd13r8s3 3r8t3 4gd1D 4gd2DContact Map
3knh3knhD 3kni8 3knjD 3knk8Contact Map
3ohc3ohcD 3ohdD 3ohj8 3ohk8Contact Map
3f1e3f1eD 3f1f8 3f1gD 3f1h8Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
9_G 79_F 0.92 0.01
6_T 179_E 0.92 0.01
22_V 127_T 0.89 0.01
20_G 130_G 0.89 0.01
11_K 163_E 0.81 0.00
34_W 209_R 0.78 0.00
57_R 142_P 0.76 0.00
6_T 171_G 0.71 0.00
44_K 73_R 0.70 0.00
30_R 143_G 0.70 0.00
45_G 55_A 0.69 0.00
9_G 112_V 0.69 0.00
27_T 93_F 0.69 0.00
58_I 208_S 0.69 0.00
63_P 171_G 0.68 0.00
55_A 146_I 0.68 0.00
28_G 168_R 0.67 0.00
51_A 168_R 0.67 0.00
11_K 24_E 0.66 0.00
7_H 124_G 0.65 0.00
26_K 190_D 0.64 0.00
61_L 178_V 0.64 0.00
61_L 70_I 0.64 0.00
4_M 81_E 0.63 0.00
63_P 178_V 0.62 0.00
27_T 191_R 0.62 0.00
45_G 84_K 0.62 0.00
19_S 142_P 0.62 0.00
33_N 51_P 0.61 0.00
8_K 1_M 0.61 0.00
8_K 20_Y 0.60 0.00
56_E 149_A 0.60 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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