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OPENSEQ.org
L31 - S06
UniProt: Q5SJE1 - Q5SLP8
Length: 172
Sequences: 1228
Seq/Len: 7.53
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cF 3v2d4 3v2eF 3v2f4Contact Map
2j002j00F 2j014 2j02F 2j034Contact Map
4juw4juwF 4jux4Contact Map
3uyd3uydI 3uye4 3uyfI 3uyg4Contact Map
3ohc3ohcF 3ohdF 3ohj4 3ohk4Contact Map
3knh3knhF 3kni4 3knjF 3knk4Contact Map
3f1e3f1eF 3f1f4 3f1gF 3f1h4Contact Map
3ohy3ohyF 3ohz4 3oi0F 3oi14Contact Map
3v223v22F 3v234 3v24F 3v254Contact Map
3uz63uz6I 3uz7I 3uz84 3uz94Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
58_R 77_R 0.95 0.01
30_E 85_V 0.86 0.01
56_V 46_R 0.85 0.01
52_T 79_L 0.76 0.01
62_R 56_P 0.76 0.01
13_R 89_M 0.75 0.01
17_G 95_E 0.75 0.01
2_K 53_A 0.72 0.01
63_Y 14_L 0.72 0.01
62_R 30_L 0.71 0.01
27_T 90_V 0.70 0.01
55_R 32_N 0.70 0.01
52_T 86_R 0.67 0.01
66_S 85_V 0.67 0.01
13_R 9_V 0.66 0.01
19_G 54_K 0.65 0.01
10_V 80_R 0.65 0.01
46_Q 7_N 0.64 0.01
55_R 44_G 0.64 0.01
34_E 10_L 0.64 0.01
63_Y 65_V 0.64 0.01
52_T 78_E 0.63 0.01
35_V 77_R 0.63 0.01
5_I 41_E 0.63 0.01
65_D 53_A 0.62 0.01
53_E 54_K 0.62 0.01
11_P 85_V 0.62 0.01
62_R 19_L 0.62 0.01
38_K 28_R 0.62 0.01
56_V 93_S 0.61 0.01
62_R 51_P 0.61 0.01
35_V 21_L 0.61 0.01
50_V 14_L 0.61 0.01
46_Q 13_N 0.61 0.01
25_Y 8_I 0.60 0.01
15_I 65_V 0.60 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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