May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L31 - S16
UniProt: Q5SJE1 - Q5SJH3
Length: 159
Sequences: 1279
Seq/Len: 8.58
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cP 3v2d4 3v2eP 3v2f4Contact Map
2j002j00P 2j014 2j02P 2j034Contact Map
4juw4juwP 4jux4Contact Map
3uyd3uydS 3uye4 3uyfS 3uyg4Contact Map
3ohc3ohcP 3ohdP 3ohj4 3ohk4Contact Map
3knh3knhP 3kni4 3knjP 3knk4Contact Map
3f1e3f1eP 3f1f4 3f1gP 3f1h4Contact Map
3ohy3ohyP 3ohz4 3oi0P 3oi14Contact Map
3v223v22P 3v234 3v24P 3v254Contact Map
3uz63uz6S 3uz7S 3uz84 3uz94Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
35_V 50_K 0.77 0.00
56_V 20_V 0.75 0.00
56_V 77_A 0.74 0.00
52_T 3_K 0.72 0.00
58_R 36_I 0.72 0.00
15_I 71_R 0.68 0.00
2_K 43_K 0.65 0.00
17_G 21_V 0.61 0.00
57_E 55_R 0.59 0.00
62_R 25_R 0.57 0.00
64_G 21_V 0.57 0.00
48_R 70_A 0.57 0.00
35_V 14_N 0.57 0.00
53_E 11_S 0.56 0.00
2_K 20_V 0.55 0.00
62_R 38_Y 0.55 0.00
65_D 71_R 0.55 0.00
27_T 4_I 0.54 0.00
37_S 9_F 0.53 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 2.1611 seconds.