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OPENSEQ.org
L31 - S09
UniProt: Q5SJE1 - P80374
Length: 199
Sequences: 1132
Seq/Len: 5.99
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cI 3v2d4 3v2eI 3v2f4Contact Map
2j002j00I 2j014 2j02I 2j034Contact Map
4juw4juwI 4jux4Contact Map
3uyd3uydL 3uye4 3uyfL 3uyg4Contact Map
3ohc3ohcI 3ohdI 3ohj4 3ohk4Contact Map
3knh3knhI 3kni4 3knjI 3knk4Contact Map
3f1e3f1eI 3f1f4 3f1gI 3f1h4Contact Map
3ohy3ohyI 3ohz4 3oi0I 3oi14Contact Map
3v223v22I 3v234 3v24I 3v254Contact Map
3uz63uz6L 3uz7L 3uz84 3uz94Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
50_V 92_Y 0.90 0.01
60_Q 125_Y 0.88 0.01
53_E 3_Q 0.86 0.01
43_Y 18_F 0.84 0.01
23_E 27_T 0.81 0.01
62_R 86_V 0.80 0.01
63_Y 126_S 0.77 0.01
3_E 46_A 0.77 0.01
58_R 41_V 0.77 0.01
65_D 13_A 0.77 0.01
61_R 68_G 0.77 0.01
33_V 122_A 0.76 0.01
14_I 106_A 0.75 0.01
57_E 48_E 0.75 0.01
61_R 31_Q 0.74 0.01
25_Y 114_Y 0.73 0.01
53_E 37_F 0.71 0.00
57_E 109_V 0.71 0.00
60_Q 41_V 0.70 0.00
49_F 14_V 0.69 0.00
12_A 109_V 0.69 0.00
63_Y 45_A 0.69 0.00
55_R 126_S 0.69 0.00
42_F 38_Q 0.68 0.00
19_G 75_D 0.68 0.00
28_K 94_A 0.66 0.00
53_E 123_P 0.66 0.00
11_P 54_D 0.65 0.00
61_R 26_V 0.65 0.00
23_E 35_E 0.65 0.00
48_R 40_L 0.65 0.00
43_Y 65_V 0.65 0.00
51_D 92_Y 0.64 0.00
26_S 121_R 0.64 0.00
56_V 63_I 0.64 0.00
22_I 117_H 0.63 0.00
53_E 116_K 0.63 0.00
34_E 44_V 0.63 0.00
43_Y 106_A 0.62 0.00
32_Y 55_A 0.62 0.00
11_P 34_N 0.61 0.00
35_V 65_V 0.60 0.00
46_Q 37_F 0.60 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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