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OPENSEQ.org
L31 - S02
UniProt: Q5SJE1 - P80371
Length: 327
Sequences: 1064
Seq/Len: 3.63
I_Prob: 0.04
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cB 3v2d4 3v2eB 3v2f4Contact Map
2j002j00B 2j014 2j02B 2j034Contact Map
4juw4juwB 4jux4Contact Map
3uyd3uydE 3uye4 3uyfE 3uyg4Contact Map
3knh3knhB 3kni4 3knjB 3knk4Contact Map
3ohc3ohcB 3ohdB 3ohj4 3ohk4Contact Map
3ohy3ohyB 3ohz4 3oi0B 3oi14Contact Map
3f1e3f1eB 3f1f4 3f1gB 3f1h4Contact Map
3v223v22B 3v234 3v24B 3v254Contact Map
3uz63uz6E 3uz7E 3uz84 3uz94Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
55_R 190_T 1.08 0.04
56_V 94_N 0.92 0.02
46_Q 124_S 0.90 0.02
50_V 31_Y 0.90 0.02
31_I 30_R 0.88 0.02
58_R 179_K 0.88 0.02
62_R 93_V 0.87 0.02
63_Y 174_V 0.86 0.02
64_G 101_M 0.84 0.02
62_R 42_I 0.82 0.02
8_K 143_E 0.80 0.02
65_D 186_A 0.79 0.02
62_R 33_Y 0.78 0.01
64_G 93_V 0.75 0.01
8_K 81_V 0.74 0.01
63_Y 9_E 0.73 0.01
25_Y 115_L 0.73 0.01
53_E 105_F 0.69 0.01
35_V 135_Q 0.68 0.01
17_G 12_E 0.68 0.01
65_D 95_Q 0.68 0.01
43_Y 154_L 0.66 0.01
24_T 177_A 0.65 0.01
15_I 81_V 0.65 0.01
35_V 152_F 0.64 0.01
45_G 47_T 0.64 0.01
62_R 64_R 0.64 0.01
35_V 57_F 0.64 0.01
55_R 20_E 0.64 0.01
10_V 226_R 0.63 0.01
48_R 31_Y 0.63 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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