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OPENSEQ.org

L31 - S07
UniProt: Q5SJE1 - P17291
Length: 227
Sequences: 987
Seq/Len: 4.47
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cG 3v2d4 3v2eG 3v2f4Contact Map
2j002j00G 2j014 2j02G 2j034Contact Map
4juw4juwG 4jux4Contact Map
3uyd3uydJ 3uye4 3uyfJ 3uyg4Contact Map
3ohc3ohcG 3ohdG 3ohj4 3ohk4Contact Map
3knh3knhG 3kni4 3knjG 3knk4Contact Map
3ohy3ohyG 3ohz4 3oi0G 3oi14Contact Map
3f1e3f1eG 3f1f4 3f1gG 3f1h4Contact Map
3v223v22G 3v234 3v24G 3v254Contact Map
3uz63uz6J 3uz7J 3uz84 3uz94Contact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
34_E 6_R 0.94 0.01
33_V 100_A 0.85 0.01
49_F 37_N 0.85 0.01
63_Y 108_A 0.84 0.01
50_V 38_L 0.82 0.01
58_R 91_V 0.78 0.01
63_Y 135_V 0.77 0.01
43_Y 119_R 0.77 0.01
34_E 36_K 0.76 0.01
28_K 128_A 0.74 0.01
4_G 33_D 0.74 0.01
34_E 134_A 0.74 0.01
46_Q 152_A 0.73 0.01
48_R 40_A 0.72 0.01
11_P 76_R 0.72 0.01
9_L 131_K 0.70 0.00
52_T 70_K 0.70 0.00
57_E 64_Q 0.70 0.00
34_E 112_P 0.70 0.00
37_S 16_L 0.69 0.00
4_G 23_V 0.69 0.00
31_I 119_R 0.68 0.00
28_K 143_R 0.68 0.00
63_Y 141_V 0.67 0.00
48_R 38_L 0.67 0.00
57_E 96_Q 0.67 0.00
26_S 53_K 0.67 0.00
48_R 154_Y 0.66 0.00
61_R 41_R 0.66 0.00
58_R 106_Q 0.66 0.00
10_V 63_K 0.66 0.00
27_T 23_V 0.66 0.00
25_Y 63_K 0.65 0.00
49_F 47_C 0.65 0.00
4_G 12_L 0.65 0.00
22_I 55_G 0.65 0.00
49_F 84_N 0.65 0.00
46_Q 17_V 0.64 0.00
51_D 84_N 0.64 0.00
46_Q 100_A 0.64 0.00
23_E 7_A 0.64 0.00
57_E 112_P 0.64 0.00
48_R 29_K 0.64 0.00
9_L 96_Q 0.64 0.00
62_R 131_K 0.64 0.00
22_I 4_R 0.63 0.00
55_R 152_A 0.63 0.00
43_Y 51_Q 0.63 0.00
62_R 101_L 0.63 0.00
63_Y 92_S 0.63 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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