May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

L25 - L35
UniProt: Q5SHZ1 - Q5SKU1
Length: 271
Sequences: 1182
Seq/Len: 4.75
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dZ8 3v2fZ8Contact Map
2j002j01Z8 2j03Z8Contact Map
4juw4juxZ8Contact Map
4kix4kixV3 4kizV3 4kj1V3 4kj3V3Contact Map
4kj54kj5V3 4kj7V3 4kj9V3 4kjbV3Contact Map
2zjr2zjrS3Contact Map
4btc4btdZ8Contact Map
3uyd3uyeV8 3uygV8Contact Map
3v223v23Z8 3v25Z8Contact Map
4gd13r8sV3 3r8tV3Contact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
27_V 7_H 0.90 0.01
73_Q 11_K 0.90 0.01
94_E 15_K 0.78 0.00
163_L 62_L 0.78 0.00
88_F 50_L 0.76 0.00
47_V 58_I 0.76 0.00
13_E 46_R 0.73 0.00
126_V 9_G 0.70 0.00
77_D 24_A 0.70 0.00
176_P 15_K 0.70 0.00
102_L 7_H 0.69 0.00
77_D 33_N 0.68 0.00
91_L 38_G 0.68 0.00
144_L 61_L 0.67 0.00
99_Y 18_A 0.66 0.00
56_V 57_R 0.66 0.00
103_R 10_A 0.65 0.00
39_V 6_T 0.65 0.00
147_G 27_T 0.64 0.00
119_E 51_A 0.64 0.00
166_S 7_H 0.64 0.00
70_L 9_G 0.64 0.00
173_A 58_I 0.63 0.00
59_L 17_T 0.63 0.00
30_N 27_T 0.63 0.00
66_S 53_P 0.63 0.00
9_Y 56_E 0.62 0.00
72_R 40_E 0.62 0.00
106_G 62_L 0.61 0.00
44_F 19_S 0.61 0.00
44_F 14_V 0.61 0.00
143_G 9_G 0.61 0.00
8_Y 17_T 0.61 0.00
168_E 28_G 0.60 0.00
47_V 9_G 0.60 0.00
170_T 29_K 0.60 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 1.0322 seconds.