May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L25 - S12
UniProt: Q5SHZ1 - Q5SHN3
Length: 338
Sequences: 1135
Seq/Len: 3.66
I_Prob: 0.02
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cL 3v2dZ 3v2eL 3v2fZContact Map
2j002j00L 2j01Z 2j02L 2j03ZContact Map
4juw4juwL 4juxZContact Map
4kix4kixV 4kiyL 4kizV 4kj0L 4kj1V 4kj2L 4kj3V 4kj4LContact Map
4kj54kj5V 4kj6L 4kj7V 4kj8L 4kj9V 4kjaL 4kjbV 4kjcLContact Map
3uyd3uydO 3uyeV 3uyfO 3uygVContact Map
4gd13r8sV 3r8tV 4gd1L 4gd2LContact Map
3knh3knhL 3kniZ 3knjL 3knkZContact Map
3ohc3ohcL 3ohdL 3ohjZ 3ohkZContact Map
3f1e3f1eL 3f1fZ 3f1gL 3f1hZContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
98_M 49_L 1.03 0.02
74_V 54_K 0.93 0.01
36_K 79_V 0.91 0.01
76_L 54_K 0.90 0.01
153_S 82_I 0.88 0.01
14_K 101_V 0.88 0.01
32_H 79_V 0.88 0.01
53_I 2_P 0.86 0.01
88_F 96_H 0.84 0.01
55_H 82_I 0.83 0.01
84_E 30_R 0.82 0.01
77_D 70_E 0.82 0.01
177_P 98_V 0.82 0.01
99_Y 65_A 0.81 0.01
76_L 2_P 0.81 0.01
149_S 22_P 0.80 0.01
105_V 121_K 0.80 0.01
124_I 61_Y 0.80 0.01
73_Q 101_V 0.79 0.01
119_E 49_L 0.79 0.01
142_S 104_A 0.78 0.01
160_G 18_K 0.77 0.01
83_P 8_V 0.77 0.01
101_P 38_R 0.76 0.01
75_N 79_V 0.76 0.01
137_I 121_K 0.74 0.01
59_L 24_L 0.74 0.01
115_G 104_A 0.74 0.01
125_L 30_R 0.74 0.01
12_G 52_V 0.74 0.01
11_E 27_A 0.73 0.01
104_F 70_E 0.73 0.01
13_E 38_R 0.73 0.01
112_R 58_T 0.72 0.01
56_V 13_E 0.72 0.01
115_G 122_P 0.72 0.01
91_L 54_K 0.71 0.01
172_A 82_I 0.71 0.01
16_S 111_K 0.71 0.01
113_A 98_V 0.71 0.01
138_E 16_R 0.70 0.01
112_R 96_H 0.69 0.01
97_E 109_D 0.69 0.01
23_K 17_K 0.69 0.01
61_L 70_E 0.68 0.01
97_E 5_N 0.68 0.01
36_K 122_P 0.68 0.01
120_I 108_K 0.68 0.01
78_K 38_R 0.68 0.01
28_M 108_K 0.68 0.01
6_K 13_E 0.67 0.01
100_V 98_V 0.67 0.01
89_F 11_G 0.67 0.01
138_E 88_K 0.67 0.01
136_F 68_P 0.67 0.01
53_I 79_V 0.66 0.01
106_G 11_G 0.66 0.01
94_E 10_K 0.66 0.01
80_R 13_E 0.66 0.01
8_Y 113_S 0.65 0.01
143_G 27_A 0.65 0.01
76_L 64_T 0.65 0.01
125_L 96_H 0.65 0.01
99_Y 97_I 0.65 0.01
128_V 27_A 0.65 0.01
92_S 15_V 0.64 0.01
54_H 68_P 0.64 0.01
15_P 88_K 0.64 0.01
128_V 68_P 0.64 0.01
86_V 53_A 0.63 0.01
96_V 109_D 0.63 0.01
124_I 19_S 0.63 0.01
106_G 97_I 0.63 0.01
74_V 81_L 0.63 0.01
140_D 98_V 0.63 0.01
59_L 21_V 0.63 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.3661 seconds.