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OPENSEQ.org
L25 - S04
UniProt: Q5SHZ1 - P80373
Length: 415
Sequences: 1182
Seq/Len: 3.02
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cD 3v2dZ 3v2eD 3v2fZContact Map
2j002j00D 2j01Z 2j02D 2j03ZContact Map
4juw4juwD 4juxZContact Map
4kix4kixV 4kiyD 4kizV 4kj0D 4kj1V 4kj2D 4kj3V 4kj4DContact Map
4kj54kj5V 4kj6D 4kj7V 4kj8D 4kj9V 4kjaD 4kjbV 4kjcDContact Map
3uyd3uydG 3uyeV 3uyfG 3uygVContact Map
4gd13r8sV 3r8tV 4gd1D 4gd2DContact Map
3knh3knhD 3kniZ 3knjD 3knkZContact Map
3ohc3ohcD 3ohdD 3ohjZ 3ohkZContact Map
3f1e3f1eD 3f1fZ 3f1gD 3f1hZContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
76_L 65_R 0.98 0.01
142_S 108_L 0.96 0.01
175_V 153_R 0.95 0.01
57_I 146_I 0.93 0.01
152_A 175_S 0.91 0.01
71_V 10_R 0.91 0.01
167_P 84_K 0.90 0.01
43_E 150_E 0.87 0.00
81_R 65_R 0.86 0.00
155_L 171_G 0.80 0.00
126_V 105_V 0.80 0.00
4_R 175_S 0.80 0.00
28_M 126_I 0.78 0.00
20_R 146_I 0.76 0.00
142_S 121_V 0.76 0.00
172_A 126_I 0.73 0.00
92_S 79_F 0.73 0.00
49_R 17_V 0.72 0.00
39_V 131_R 0.71 0.00
96_V 206_F 0.71 0.00
133_I 149_A 0.71 0.00
105_V 80_E 0.71 0.00
174_V 180_G 0.70 0.00
77_D 166_K 0.70 0.00
22_G 76_R 0.70 0.00
143_G 142_P 0.68 0.00
37_V 201_Q 0.68 0.00
88_F 49_R 0.68 0.00
128_V 161_N 0.68 0.00
106_G 194_L 0.67 0.00
44_F 90_G 0.67 0.00
89_F 106_Y 0.66 0.00
126_V 127_T 0.66 0.00
32_H 56_V 0.66 0.00
17_A 150_E 0.65 0.00
124_I 127_T 0.65 0.00
5_L 39_P 0.65 0.00
17_A 122_R 0.64 0.00
33_L 128_V 0.64 0.00
137_I 181_M 0.64 0.00
83_P 175_S 0.64 0.00
116_V 132_R 0.63 0.00
57_I 162_L 0.63 0.00
128_V 113_S 0.63 0.00
45_D 5_I 0.63 0.00
60_E 147_A 0.62 0.00
107_T 194_L 0.62 0.00
38_Y 65_R 0.62 0.00
26_G 188_L 0.62 0.00
87_D 189_P 0.61 0.00
107_T 202_L 0.61 0.00
137_I 160_Q 0.61 0.00
76_L 10_R 0.61 0.00
72_R 209_R 0.61 0.00
143_G 117_A 0.61 0.00
152_A 147_A 0.60 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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