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OPENSEQ.org
L25 - S02
UniProt: Q5SHZ1 - P80371
Length: 462
Sequences: 1127
Seq/Len: 2.73
I_Prob: 0.04
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cB 3v2dZ 3v2eB 3v2fZContact Map
2j002j00B 2j01Z 2j02B 2j03ZContact Map
4juw4juwB 4juxZContact Map
4kix4kixV 4kiyB 4kizV 4kj0B 4kj1V 4kj2B 4kj3V 4kj4BContact Map
4kj54kj5V 4kj6B 4kj7V 4kj8B 4kj9V 4kjaB 4kjbV 4kjcBContact Map
3uyd3uydE 3uyeV 3uyfE 3uygVContact Map
4gd13r8sV 3r8tV 4gd1B 4gd2BContact Map
3knh3knhB 3kniZ 3knjB 3knkZContact Map
3ohc3ohcB 3ohdB 3ohjZ 3ohkZContact Map
3f1e3f1eB 3f1fZ 3f1gB 3f1hZContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
70_L 190_T 1.14 0.04
108_P 164_V 1.13 0.03
140_D 199_Y 1.07 0.03
129_S 188_A 1.02 0.03
97_E 165_V 1.01 0.02
141_V 29_A 0.99 0.02
80_R 116_E 0.96 0.02
141_V 81_V 0.93 0.02
21_A 108_I 0.88 0.02
105_V 82_R 0.87 0.02
94_E 165_V 0.86 0.01
140_D 68_I 0.84 0.01
70_L 89_G 0.84 0.01
117_L 164_V 0.82 0.01
178_E 109_S 0.82 0.01
124_I 186_A 0.81 0.01
5_L 112_V 0.81 0.01
101_P 115_L 0.80 0.01
141_V 164_V 0.80 0.01
55_H 81_V 0.79 0.01
48_F 22_K 0.79 0.01
69_T 199_Y 0.79 0.01
105_V 174_V 0.79 0.01
72_R 75_K 0.79 0.01
84_E 68_I 0.78 0.01
69_T 142_L 0.77 0.01
13_E 114_R 0.77 0.01
78_K 136_V 0.77 0.01
103_R 47_T 0.76 0.01
161_V 203_G 0.76 0.01
55_H 37_N 0.75 0.01
160_G 181_F 0.75 0.01
86_V 15_V 0.74 0.01
155_L 198_D 0.74 0.01
118_Q 9_E 0.74 0.01
60_E 193_D 0.74 0.01
170_T 10_L 0.73 0.01
126_V 184_V 0.73 0.01
116_V 190_T 0.73 0.01
124_I 94_N 0.73 0.01
29_Y 173_A 0.73 0.01
149_S 210_S 0.72 0.01
70_L 185_I 0.72 0.01
61_L 175_R 0.72 0.01
15_P 168_T 0.71 0.01
44_F 92_Y 0.70 0.01
141_V 110_Q 0.70 0.01
55_H 192_S 0.70 0.01
84_E 47_T 0.69 0.01
20_R 65_G 0.69 0.01
79_R 76_Q 0.69 0.01
21_A 43_D 0.69 0.01
174_V 223_I 0.69 0.01
90_V 13_A 0.69 0.01
72_R 51_L 0.69 0.01
82_R 218_A 0.69 0.01
126_V 174_V 0.68 0.01
156_K 185_I 0.68 0.01
73_Q 88_A 0.68 0.01
78_K 161_A 0.68 0.01
22_G 94_N 0.68 0.01
172_A 128_E 0.68 0.01
11_E 110_Q 0.67 0.01
147_G 76_Q 0.67 0.01
75_N 83_M 0.67 0.01
164_A 165_V 0.67 0.01
127_K 101_M 0.67 0.01
61_L 224_Q 0.67 0.01
116_V 31_Y 0.67 0.01
150_L 127_I 0.67 0.01
102_L 139_K 0.67 0.01
89_F 93_V 0.66 0.01
26_G 164_V 0.66 0.01
22_G 160_D 0.66 0.01
166_S 192_S 0.66 0.01
91_L 193_D 0.66 0.01
42_V 171_A 0.66 0.01
142_S 31_Y 0.65 0.01
89_F 56_R 0.65 0.01
47_V 29_A 0.65 0.01
144_L 12_E 0.65 0.01
15_P 62_A 0.65 0.01
130_P 211_I 0.65 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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