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OPENSEQ.org

L25 - L27
UniProt: Q5SHZ1 - P60493
Length: 291
Sequences: 1232
Seq/Len: 4.61
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dZ0 3v2fZ0Contact Map
2j002j01Z0 2j03Z0Contact Map
4juw4juxZ0Contact Map
4kix4kixVW 4kizVW 4kj1VW 4kj3VWContact Map
4kj54kj5VW 4kj7VW 4kj9VW 4kjbVWContact Map
2zjr2zjrSTContact Map
4btc4btdZ0Contact Map
3uyd3uyeV3 3uygV3Contact Map
3v223v23Z0 3v25Z0Contact Map
4gd13r8sVW 3r8tVWContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
100_V 71_D 0.88 0.00
123_D 18_A 0.77 0.00
85_H 1_M 0.76 0.00
116_V 68_E 0.76 0.00
27_V 59_L 0.75 0.00
18_L 18_A 0.74 0.00
32_H 37_L 0.73 0.00
105_V 20_R 0.72 0.00
100_V 23_V 0.70 0.00
158_P 46_K 0.70 0.00
152_A 75_L 0.69 0.00
9_Y 83_P 0.69 0.00
167_P 6_G 0.66 0.00
21_A 26_Y 0.66 0.00
22_G 50_N 0.66 0.00
89_F 33_A 0.66 0.00
44_F 72_R 0.66 0.00
178_E 81_V 0.66 0.00
152_A 59_L 0.66 0.00
151_H 10_T 0.64 0.00
57_I 60_F 0.63 0.00
167_P 81_V 0.63 0.00
174_V 50_N 0.62 0.00
97_E 55_R 0.61 0.00
80_R 68_E 0.61 0.00
21_A 59_L 0.59 0.00
93_D 60_F 0.59 0.00
78_K 10_T 0.59 0.00
31_R 38_V 0.59 0.00
15_P 74_R 0.58 0.00
31_R 6_G 0.57 0.00
81_R 74_R 0.57 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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