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OPENSEQ.org

L15 - S06
UniProt: Q5SHQ7 - Q5SLP8
Length: 251
Sequences: 1252
Seq/Len: 5.17
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cF 3v2dP 3v2eF 3v2fPContact Map
2j002j00F 2j01P 2j02F 2j03PContact Map
4juw4juwF 4juxPContact Map
4kix4kixL 4kiyF 4kizL 4kj0F 4kj1L 4kj2F 4kj3L 4kj4FContact Map
4kj54kj5L 4kj6F 4kj7L 4kj8F 4kj9L 4kjaF 4kjbL 4kjcFContact Map
3ohc3ohcF 3ohdF 3ohjP 3ohkPContact Map
3knh3knhF 3kniP 3knjF 3knkPContact Map
3uz63uz6I 3uz7I 3uz8O 3uz9OContact Map
3oge3ogeF 3ogyF 3oh5P 3oh7PContact Map
3uyd3uydI 3uyeO 3uyfI 3uygOContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
47_D 2_R 0.96 0.01
117_E 63_Y 0.86 0.01
3_L 45_L 0.80 0.01
95_V 66_E 0.75 0.01
132_K 99_A 0.73 0.01
59_L 3_R 0.71 0.01
115_L 29_A 0.70 0.01
12_A 21_L 0.69 0.01
135_L 31_E 0.69 0.01
58_T 86_R 0.68 0.01
110_Y 65_V 0.65 0.01
46_K 67_M 0.65 0.01
69_G 62_W 0.65 0.01
33_R 2_R 0.65 0.01
12_A 45_L 0.65 0.01
146_V 53_A 0.64 0.01
111_R 94_Q 0.64 0.01
56_S 91_V 0.64 0.01
56_S 43_L 0.62 0.01
92_E 86_R 0.62 0.01
94_E 92_K 0.62 0.01
24_G 8_I 0.62 0.01
31_A 64_Q 0.61 0.01
131_S 27_Q 0.61 0.01
84_N 86_R 0.61 0.01
60_M 27_Q 0.61 0.01
23_P 56_P 0.60 0.01
94_E 34_G 0.60 0.01
59_L 90_V 0.60 0.01
107_K 69_E 0.60 0.01
108_K 29_A 0.60 0.01
23_P 64_Q 0.59 0.01
131_S 78_E 0.59 0.01
88_L 38_E 0.58 0.01
56_S 87_R 0.58 0.01
92_E 74_D 0.58 0.01
29_K 74_D 0.58 0.01
83_V 53_A 0.58 0.01
135_L 29_A 0.58 0.01
65_R 77_R 0.58 0.01
131_S 55_D 0.58 0.01
76_K 45_L 0.58 0.01
69_G 81_I 0.57 0.00
60_M 92_K 0.57 0.00
122_P 46_R 0.57 0.00
122_P 93_S 0.56 0.00
105_L 68_P 0.56 0.00
59_L 26_I 0.56 0.00
14_K 46_R 0.56 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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