May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L15 - L36
UniProt: Q5SHQ7 - Q5SHR2
Length: 187
Sequences: 870
Seq/Len: 4.83
I_Prob: 0.76
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dP9 3v2fP9Contact Map
2j002j01P9 2j03P9Contact Map
4juw4juxP9Contact Map
4kix4kixL4 4kizL4 4kj1L4 4kj3L4Contact Map
4kj54kj5L4 4kj7L4 4kj9L4 4kjbL4Contact Map
2zjr2zjrI4Contact Map
4btc4btdP9Contact Map
4gd13r8sL4 3r8tL4Contact Map
3knh3kniP9 3knkP9Contact Map
3v223v23P9 3v25P9Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
56_S 18_R 1.44 0.76
3_L 37_G 0.93 0.29
46_K 31_K 0.91 0.27
110_Y 20_H 0.91 0.27
33_R 15_K 0.86 0.22
84_N 29_N 0.84 0.21
42_S 31_K 0.75 0.14
45_L 35_R 0.72 0.13
129_A 4_R 0.69 0.11
2_K 20_H 0.68 0.11
88_L 18_R 0.68 0.10
18_R 9_R 0.68 0.10
136_E 28_E 0.65 0.09
4_S 24_Y 0.65 0.09
122_P 4_R 0.64 0.09
97_P 35_R 0.64 0.08
141_A 35_R 0.63 0.08
78_P 29_N 0.63 0.08
26_G 30_P 0.62 0.08
33_R 18_R 0.60 0.07
36_K 22_R 0.59 0.07
137_K 28_E 0.58 0.06
112_L 12_D 0.58 0.06
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 1.3896 seconds.