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OPENSEQ.org
L15 - S20
UniProt: Q5SHQ7 - P80380
Length: 256
Sequences: 1315
Seq/Len: 5.74
I_Prob: 0.03
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cT 3v2dP 3v2eT 3v2fPContact Map
2j002j00T 2j01P 2j02T 2j03PContact Map
4juw4juwT 4juxPContact Map
4kix4kixL 4kiyT 4kizL 4kj0T 4kj1L 4kj2T 4kj3L 4kj4TContact Map
4kj54kj5L 4kj6T 4kj7L 4kj8T 4kj9L 4kjaT 4kjbL 4kjcTContact Map
3ohc3ohcT 3ohdT 3ohjP 3ohkPContact Map
3knh3knhT 3kniP 3knjT 3knkPContact Map
3uz63uz6W 3uz7W 3uz8O 3uz9OContact Map
3oge3ogeT 3ogyT 3oh5P 3oh7PContact Map
3uyd3uydW 3uyeO 3uyfW 3uygOContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
60_M 11_S 1.01 0.03
93_G 37_S 0.77 0.01
45_L 73_H 0.73 0.01
84_N 11_S 0.70 0.01
106_L 23_R 0.66 0.01
33_R 29_K 0.66 0.01
100_L 75_N 0.66 0.01
5_D 88_V 0.64 0.01
117_E 42_Q 0.64 0.01
56_S 43_L 0.63 0.01
70_Q 71_T 0.63 0.01
50_R 8_R 0.63 0.01
62_L 77_A 0.62 0.01
14_K 85_M 0.62 0.01
33_R 47_G 0.61 0.01
91_F 31_S 0.60 0.01
113_K 33_I 0.60 0.01
32_T 9_N 0.59 0.01
131_S 65_K 0.56 0.01
106_L 53_L 0.56 0.01
36_K 22_R 0.56 0.01
79_R 72_L 0.55 0.01
32_T 44_A 0.55 0.01
106_L 54_K 0.55 0.01
144_E 74_K 0.55 0.01
55_R 69_G 0.55 0.01
148_L 36_L 0.55 0.01
140_A 57_R 0.55 0.01
16_R 22_R 0.54 0.01
38_Q 79_R 0.54 0.01
40_S 12_A 0.54 0.01
65_R 79_R 0.53 0.01
35_H 64_D 0.53 0.01
4_S 89_R 0.53 0.01
25_S 78_A 0.53 0.01
56_S 40_A 0.53 0.01
129_A 61_S 0.52 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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