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OPENSEQ.org
L15 - S02
UniProt: Q5SHQ7 - P80371
Length: 406
Sequences: 1336
Seq/Len: 3.60
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cB 3v2dP 3v2eB 3v2fPContact Map
2j002j00B 2j01P 2j02B 2j03PContact Map
4juw4juwB 4juxPContact Map
4kix4kixL 4kiyB 4kizL 4kj0B 4kj1L 4kj2B 4kj3L 4kj4BContact Map
4kj54kj5L 4kj6B 4kj7L 4kj8B 4kj9L 4kjaB 4kjbL 4kjcBContact Map
3ohc3ohcB 3ohdB 3ohjP 3ohkPContact Map
3knh3knhB 3kniP 3knjB 3knkPContact Map
3uz63uz6E 3uz7E 3uz8O 3uz9OContact Map
3u5b3u5cA 3u5ea 3u5gA 3u5iaContact Map
3oge3ogeB 3ogyB 3oh5P 3oh7PContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
56_S 144_R 0.90 0.00
90_R 81_V 0.86 0.00
49_R 105_F 0.86 0.00
40_S 208_I 0.85 0.00
24_G 136_V 0.82 0.00
131_S 142_L 0.77 0.00
59_L 229_V 0.73 0.00
91_F 88_A 0.73 0.00
69_G 108_I 0.73 0.00
3_L 227_G 0.72 0.00
122_P 147_K 0.72 0.00
90_R 86_E 0.71 0.00
89_A 86_E 0.71 0.00
31_A 65_G 0.71 0.00
30_T 159_P 0.70 0.00
31_A 227_G 0.70 0.00
131_S 30_R 0.69 0.00
113_K 48_M 0.69 0.00
2_K 10_L 0.68 0.00
32_T 224_Q 0.68 0.00
105_L 142_L 0.68 0.00
99_L 88_A 0.67 0.00
145_P 175_R 0.67 0.00
127_A 43_D 0.67 0.00
96_T 88_A 0.66 0.00
76_K 140_H 0.66 0.00
114_I 35_E 0.66 0.00
129_A 93_V 0.66 0.00
113_K 10_L 0.65 0.00
13_N 118_L 0.64 0.00
2_K 184_V 0.64 0.00
95_V 211_I 0.64 0.00
89_A 82_R 0.64 0.00
50_R 20_E 0.64 0.00
140_A 42_I 0.64 0.00
77_R 179_K 0.64 0.00
131_S 91_P 0.64 0.00
60_M 109_S 0.63 0.00
102_R 198_D 0.63 0.00
68_Q 124_S 0.63 0.00
117_E 147_K 0.62 0.00
137_K 192_S 0.62 0.00
32_T 72_G 0.62 0.00
56_S 137_R 0.61 0.00
5_D 229_V 0.61 0.00
33_R 67_T 0.61 0.00
129_A 174_V 0.61 0.00
42_S 37_N 0.60 0.00
59_L 140_H 0.60 0.00
106_L 57_F 0.60 0.00
2_K 81_V 0.60 0.00
87_D 135_Q 0.60 0.00
136_E 192_S 0.60 0.00
23_P 214_I 0.60 0.00
24_G 163_F 0.60 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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