May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

L15 - L33
UniProt: Q5SHQ7 - P35871
Length: 204
Sequences: 1209
Seq/Len: 6.14
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dP6 3v2fP6Contact Map
2j002j01P6 2j03P6Contact Map
4juw4juxP6Contact Map
4kix4kixL1 4kizL1 4kj1L1 4kj3L1Contact Map
4kj54kj5L1 4kj7L1 4kj9L1 4kjbL1Contact Map
2zjr2zjrI1Contact Map
4btc4btdP6Contact Map
3uyd3uyeO6 3uygO6Contact Map
4gd13r8sL1 3r8tL1Contact Map
3knh3kniP6 3knkP6Contact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
56_S 42_W 0.79 0.00
40_S 12_E 0.74 0.00
21_R 25_K 0.74 0.00
125_V 50_R 0.72 0.00
58_T 19_R 0.68 0.00
100_L 28_R 0.66 0.00
122_P 32_N 0.63 0.00
35_H 49_H 0.62 0.00
39_K 23_T 0.61 0.00
140_A 31_P 0.61 0.00
113_K 11_L 0.61 0.00
40_S 45_K 0.60 0.00
89_A 48_V 0.58 0.00
123_L 5_V 0.56 0.00
3_L 27_K 0.54 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 1.457 seconds.