May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

L15 - S07
UniProt: Q5SHQ7 - P17291
Length: 306
Sequences: 1307
Seq/Len: 4.37
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cG 3v2dP 3v2eG 3v2fPContact Map
2j002j00G 2j01P 2j02G 2j03PContact Map
4juw4juwG 4juxPContact Map
4kix4kixL 4kiyG 4kizL 4kj0G 4kj1L 4kj2G 4kj3L 4kj4GContact Map
4kj54kj5L 4kj6G 4kj7L 4kj8G 4kj9L 4kjaG 4kjbL 4kjcGContact Map
3knh3knhG 3kniP 3knjG 3knkPContact Map
3ohc3ohcG 3ohdG 3ohjP 3ohkPContact Map
3uz63uz6J 3uz7J 3uz8O 3uz9OContact Map
3oge3ogeG 3ogyG 3oh5P 3oh7PContact Map
3uyd3uydJ 3uyeO 3uyfJ 3uygOContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
117_E 12_L 0.92 0.01
6_L 140_D 0.90 0.01
137_K 13_Q 0.89 0.01
14_K 30_I 0.88 0.01
88_L 52_E 0.86 0.01
21_R 113_E 0.85 0.01
4_S 156_W 0.80 0.00
45_L 100_A 0.79 0.00
85_L 36_K 0.79 0.00
89_A 20_D 0.78 0.00
64_K 113_E 0.77 0.00
103_A 149_R 0.76 0.00
87_D 56_Q 0.71 0.00
40_S 63_K 0.70 0.00
38_Q 47_C 0.69 0.00
114_I 54_T 0.68 0.00
35_H 149_R 0.68 0.00
24_G 40_A 0.68 0.00
56_S 92_S 0.67 0.00
140_A 121_A 0.66 0.00
65_R 62_F 0.65 0.00
140_A 46_A 0.65 0.00
87_D 154_Y 0.64 0.00
6_L 24_T 0.64 0.00
49_R 125_M 0.64 0.00
19_V 38_L 0.64 0.00
98_E 108_A 0.64 0.00
39_K 149_R 0.64 0.00
113_K 63_K 0.63 0.00
83_V 98_S 0.63 0.00
8_P 75_V 0.63 0.00
105_L 129_E 0.61 0.00
117_E 134_A 0.61 0.00
95_V 60_K 0.61 0.00
58_T 83_A 0.61 0.00
60_M 32_R 0.60 0.00
111_R 64_Q 0.60 0.00
58_T 39_A 0.60 0.00
31_A 32_R 0.60 0.00
57_T 142_E 0.59 0.00
56_S 27_I 0.59 0.00
101_V 133_G 0.59 0.00
88_L 117_A 0.59 0.00
56_S 29_K 0.59 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 1.3318 seconds.