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OPENSEQ.org

L30 - S09
UniProt: Q5SHQ6 - P80374
Length: 188
Sequences: 919
Seq/Len: 4.97
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cI 3v2d3 3v2eI 3v2f3Contact Map
2j002j00I 2j013 2j02I 2j033Contact Map
4juw4juwI 4jux3Contact Map
4kix4kixZ 4kiyI 4kizZ 4kj0I 4kj1Z 4kj2I 4kj3Z 4kj4IContact Map
4kj54kj5Z 4kj6I 4kj7Z 4kj8I 4kj9Z 4kjaI 4kjbZ 4kjcIContact Map
3ohc3ohcI 3ohdI 3ohj3 3ohk3Contact Map
3knh3knhI 3kni3 3knjI 3knk3Contact Map
3uz63uz6L 3uz7L 3uz8X 3uz9XContact Map
3oge3ogeI 3ogyI 3oh53 3oh73Contact Map
3uyd3uydL 3uyeX 3uyfL 3uygXContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
15_Y 77_I 0.85 0.00
14_G 75_D 0.84 0.00
56_V 97_K 0.76 0.00
41_P 91_D 0.75 0.00
15_Y 82_A 0.71 0.00
52_H 93_R 0.71 0.00
48_E 62_Y 0.71 0.00
57_E 118_K 0.71 0.00
34_E 33_F 0.69 0.00
13_I 64_T 0.69 0.00
23_L 108_V 0.69 0.00
20_K 89_N 0.68 0.00
23_L 13_A 0.68 0.00
12_P 121_R 0.65 0.00
38_E 46_A 0.64 0.00
48_E 52_A 0.64 0.00
53_L 66_R 0.64 0.00
24_K 63_I 0.62 0.00
7_K 99_L 0.62 0.00
1_M 56_L 0.62 0.00
19_Q 14_V 0.61 0.00
8_L 6_G 0.61 0.00
8_L 58_H 0.61 0.00
25_A 5_Y 0.61 0.00
15_Y 48_E 0.60 0.00
30_R 114_Y 0.60 0.00
18_D 34_N 0.60 0.00
15_Y 28_V 0.60 0.00
53_L 33_F 0.60 0.00
30_R 106_A 0.59 0.00
47_V 52_A 0.58 0.00
31_L 63_I 0.58 0.00
6_V 87_Q 0.57 0.00
37_L 18_F 0.56 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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