May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L30 - S04
UniProt: Q5SHQ6 - P80373
Length: 269
Sequences: 933
Seq/Len: 3.48
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cD 3v2d3 3v2eD 3v2f3Contact Map
2j002j00D 2j013 2j02D 2j033Contact Map
4juw4juwD 4jux3Contact Map
4kix4kixZ 4kiyD 4kizZ 4kj0D 4kj1Z 4kj2D 4kj3Z 4kj4DContact Map
4kj54kj5Z 4kj6D 4kj7Z 4kj8D 4kj9Z 4kjaD 4kjbZ 4kjcDContact Map
3ohc3ohcD 3ohdD 3ohj3 3ohk3Contact Map
3knh3knhD 3kni3 3knjD 3knk3Contact Map
3uz63uz6G 3uz7G 3uz8X 3uz9XContact Map
3oge3ogeD 3ogyD 3oh53 3oh73Contact Map
3uyd3uydG 3uyeX 3uyfG 3uygXContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
36_V 199_N 0.95 0.01
16_P 79_F 0.93 0.01
42_A 174_L 0.91 0.01
20_K 160_Q 0.89 0.01
47_V 151_K 0.81 0.00
10_K 45_Q 0.73 0.00
56_V 78_L 0.72 0.00
4_L 95_G 0.71 0.00
37_L 175_S 0.71 0.00
18_D 55_A 0.71 0.00
21_A 113_S 0.71 0.00
21_A 79_F 0.70 0.00
17_K 175_S 0.69 0.00
58_V 10_R 0.69 0.00
2_P 65_R 0.67 0.00
50_V 117_A 0.67 0.00
1_M 184_K 0.66 0.00
15_Y 152_S 0.66 0.00
6_V 151_K 0.66 0.00
1_M 158_I 0.65 0.00
14_G 15_E 0.65 0.00
30_R 143_G 0.63 0.00
4_L 64_L 0.62 0.00
43_I 39_P 0.62 0.00
42_A 177_D 0.61 0.00
7_K 172_P 0.61 0.00
32_Q 121_V 0.61 0.00
32_Q 180_G 0.60 0.00
25_A 194_L 0.60 0.00
22_A 10_R 0.60 0.00
50_V 188_L 0.60 0.00
48_E 133_V 0.60 0.00
57_E 67_I 0.59 0.00
10_K 139_R 0.59 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.169 seconds.