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OPENSEQ.org

L30 - S03
UniProt: Q5SHQ6 - P80372
Length: 299
Sequences: 762
Seq/Len: 2.82
I_Prob: 0.02
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cC 3v2d3 3v2eC 3v2f3Contact Map
2j002j00C 2j013 2j02C 2j033Contact Map
4juw4juwC 4jux3Contact Map
4kix4kixZ 4kiyC 4kizZ 4kj0C 4kj1Z 4kj2C 4kj3Z 4kj4CContact Map
4kj54kj5Z 4kj6C 4kj7Z 4kj8C 4kj9Z 4kjaC 4kjbZ 4kjcCContact Map
3ohc3ohcC 3ohdC 3ohj3 3ohk3Contact Map
3knh3knhC 3kni3 3knjC 3knk3Contact Map
3uz63uz6F 3uz7F 3uz8X 3uz9XContact Map
3oge3ogeC 3ogyC 3oh53 3oh73Contact Map
3uyd3uydF 3uyeX 3uyfF 3uygXContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
14_G 5_I 1.07 0.02
47_V 66_V 1.04 0.01
19_Q 104_Q 1.01 0.01
15_Y 206_E 0.93 0.01
32_Q 18_W 0.92 0.01
57_E 75_V 0.90 0.01
9_V 75_V 0.89 0.01
54_V 52_L 0.88 0.01
53_L 99_V 0.87 0.01
14_G 135_K 0.86 0.01
23_L 101_L 0.86 0.01
36_V 30_R 0.86 0.01
24_K 198_V 0.83 0.01
14_G 185_G 0.82 0.01
60_E 6_H 0.82 0.01
15_Y 79_R 0.81 0.01
52_H 129_A 0.78 0.01
52_H 82_E 0.78 0.01
54_V 68_V 0.77 0.01
53_L 52_L 0.77 0.01
8_L 176_H 0.76 0.01
19_Q 129_A 0.76 0.01
31_L 68_V 0.76 0.01
31_L 94_L 0.73 0.01
53_L 100_A 0.73 0.01
9_V 91_L 0.73 0.01
13_I 86_V 0.73 0.01
22_A 119_R 0.72 0.01
25_A 107_Q 0.72 0.01
31_L 56_D 0.72 0.01
24_K 162_Q 0.71 0.01
52_H 150_K 0.70 0.01
2_P 14_I 0.70 0.01
6_V 152_I 0.70 0.01
1_M 150_K 0.70 0.01
55_R 29_Y 0.68 0.01
17_K 43_L 0.67 0.01
36_V 180_A 0.67 0.01
29_R 52_L 0.67 0.01
57_E 26_K 0.66 0.01
32_Q 69_H 0.66 0.01
55_R 145_G 0.66 0.01
47_V 140_R 0.65 0.00
59_V 176_H 0.65 0.00
13_I 157_I 0.65 0.00
11_S 103_V 0.65 0.00
14_G 24_A 0.64 0.00
23_L 21_R 0.64 0.00
9_V 8_I 0.64 0.00
57_E 14_I 0.64 0.00
6_V 10_F 0.64 0.00
46_N 67_T 0.64 0.00
31_L 102_N 0.64 0.00
14_G 64_V 0.63 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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