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OPENSEQ.org
L18 - S06
UniProt: Q5SHQ4 - Q5SLP8
Length: 213
Sequences: 1227
Seq/Len: 5.87
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cF 3v2dS 3v2eF 3v2fSContact Map
2j002j00F 2j01S 2j02F 2j03SContact Map
4juw4juwF 4juxSContact Map
4kix4kixO 4kiyF 4kizO 4kj0F 4kj1O 4kj2F 4kj3O 4kj4FContact Map
4kj54kj5O 4kj6F 4kj7O 4kj8F 4kj9O 4kjaF 4kjbO 4kjcFContact Map
3ohc3ohcF 3ohdF 3ohjS 3ohkSContact Map
3knh3knhF 3kniS 3knjF 3knkSContact Map
3uz63uz6I 3uz7I 3uz8Q 3uz9QContact Map
3oge3ogeF 3ogyF 3oh5S 3oh7SContact Map
3uyd3uydI 3uyeQ 3uyfI 3uygQContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
108_G 55_D 0.94 0.01
102_A 87_R 0.81 0.01
101_L 72_V 0.78 0.01
11_K 57_Q 0.78 0.01
10_R 81_I 0.78 0.01
18_I 3_R 0.78 0.01
97_R 61_L 0.77 0.01
57_K 83_D 0.77 0.01
90_G 57_Q 0.75 0.01
39_I 43_L 0.73 0.01
99_K 68_P 0.73 0.01
60_G 19_L 0.73 0.01
98_V 35_A 0.72 0.01
66_A 91_V 0.70 0.01
56_L 7_N 0.69 0.01
63_T 14_L 0.68 0.01
81_G 83_D 0.67 0.01
73_L 43_L 0.67 0.01
32_L 53_A 0.66 0.01
53_S 6_V 0.65 0.01
76_K 64_Q 0.65 0.01
29_F 59_Y 0.64 0.01
95_H 48_L 0.64 0.01
23_R 34_G 0.64 0.01
78_L 33_Y 0.63 0.01
95_H 12_P 0.63 0.01
12_F 73_N 0.62 0.01
9_R 60_F 0.62 0.01
10_R 77_R 0.61 0.01
67_R 66_E 0.59 0.00
16_N 89_M 0.59 0.00
50_S 40_V 0.59 0.00
92_Y 62_W 0.58 0.00
35_I 14_L 0.58 0.00
92_Y 26_I 0.58 0.00
103_E 33_Y 0.58 0.00
94_Y 65_V 0.58 0.00
73_L 63_Y 0.58 0.00
73_L 25_I 0.58 0.00
75_E 86_R 0.57 0.00
66_A 65_V 0.57 0.00
20_R 63_Y 0.57 0.00
74_A 10_L 0.57 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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