May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

L18 - L25
UniProt: Q5SHQ4 - Q5SHZ1
Length: 318
Sequences: 1236
Seq/Len: 4.22
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dSZ 3v2fSZContact Map
2j002j01SZ 2j03SZContact Map
4juw4juxSZContact Map
4kix4kixOV 4kizOV 4kj1OV 4kj3OVContact Map
4kj54kj5OV 4kj7OV 4kj9OV 4kjbOVContact Map
2zjr2zjrLSContact Map
4btc4btdSZContact Map
3uyd3uyeQV 3uygQVContact Map
4gd13r8sOV 3r8tOVContact Map
3ohc3ohjSZ 3ohkSZContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
39_I 44_F 0.86 0.00
84_Q 64_G 0.81 0.00
55_A 30_N 0.81 0.00
62_K 97_E 0.79 0.00
64_E 60_E 0.77 0.00
82_I 109_A 0.77 0.00
103_E 156_K 0.75 0.00
61_N 128_V 0.74 0.00
43_E 70_L 0.74 0.00
82_I 72_R 0.73 0.00
98_V 117_L 0.73 0.00
62_K 128_V 0.73 0.00
57_K 35_R 0.72 0.00
82_I 171_I 0.72 0.00
79_A 148_D 0.72 0.00
45_G 87_D 0.70 0.00
83_K 66_S 0.69 0.00
40_I 132_N 0.69 0.00
14_V 47_V 0.69 0.00
58_L 76_L 0.69 0.00
27_S 109_A 0.69 0.00
65_V 123_D 0.68 0.00
16_N 96_V 0.67 0.00
92_Y 151_H 0.66 0.00
74_A 112_R 0.66 0.00
103_E 6_K 0.66 0.00
23_R 56_V 0.65 0.00
50_S 51_A 0.65 0.00
14_V 67_L 0.65 0.00
37_A 78_K 0.64 0.00
79_A 139_V 0.63 0.00
48_L 174_V 0.63 0.00
18_I 108_P 0.62 0.00
77_A 85_H 0.62 0.00
103_E 155_L 0.62 0.00
49_V 73_Q 0.62 0.00
59_K 139_V 0.62 0.00
78_L 105_V 0.62 0.00
48_L 64_G 0.60 0.00
28_V 152_A 0.60 0.00
17_R 179_D 0.60 0.00
54_L 58_V 0.60 0.00
62_K 146_I 0.60 0.00
98_V 82_R 0.59 0.00
54_L 170_T 0.59 0.00
29_F 177_P 0.58 0.00
85_V 155_L 0.58 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.3613 seconds.