May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L18 - S17
UniProt: Q5SHQ4 - Q5SHP7
Length: 217
Sequences: 1264
Seq/Len: 6.58
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cQ 3v2dS 3v2eQ 3v2fSContact Map
2j002j00Q 2j01S 2j02Q 2j03SContact Map
4juw4juwQ 4juxSContact Map
4kix4kixO 4kiyQ 4kizO 4kj0Q 4kj1O 4kj2Q 4kj3O 4kj4QContact Map
4kj54kj5O 4kj6Q 4kj7O 4kj8Q 4kj9O 4kjaQ 4kjbO 4kjcQContact Map
3knh3knhQ 3kniS 3knjQ 3knkSContact Map
3ohc3ohcQ 3ohdQ 3ohjS 3ohkSContact Map
3uz63uz6T 3uz7T 3uz8Q 3uz9QContact Map
3oge3ogeQ 3ogyQ 3oh5S 3oh7SContact Map
3uyd3uydT 3uyeQ 3uyfT 3uygQContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
36_Y 7_T 0.90 0.01
93_K 40_K 0.75 0.01
32_L 36_I 0.74 0.01
103_E 73_V 0.69 0.00
99_K 7_T 0.69 0.00
94_Y 55_D 0.69 0.00
37_A 55_D 0.69 0.00
4_L 31_L 0.68 0.00
32_L 68_R 0.68 0.00
27_S 42_Y 0.67 0.00
43_E 79_S 0.67 0.00
98_V 59_I 0.66 0.00
100_A 70_R 0.66 0.00
36_Y 9_V 0.65 0.00
92_Y 35_V 0.65 0.00
3_R 52_K 0.64 0.00
75_E 48_E 0.62 0.00
19_K 44_A 0.61 0.00
92_Y 25_R 0.61 0.00
100_A 18_T 0.60 0.00
100_A 54_G 0.59 0.00
54_L 23_V 0.59 0.00
90_G 35_V 0.59 0.00
98_V 48_E 0.59 0.00
70_G 12_S 0.58 0.00
74_A 29_H 0.58 0.00
69_V 33_G 0.58 0.00
27_S 79_S 0.57 0.00
93_K 28_P 0.57 0.00
12_F 75_R 0.56 0.00
11_K 11_V 0.56 0.00
53_S 72_R 0.54 0.00
92_Y 42_Y 0.54 0.00
27_S 82_M 0.54 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.6743 seconds.